Journal
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS
Volume 61, Issue -, Pages 152-156Publisher
WILEY
DOI: 10.1002/prot.20732
Keywords
fold recognition; protein threading; protein structure prediction; sequence profile
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Funding
- NATIONAL INSTITUTE OF GENERAL MEDICAL SCIENCES [R01GM068530] Funding Source: NIH RePORTER
- NIGMS NIH HHS [R01 GM 966049, R01 GM 068530] Funding Source: Medline
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Two single-method servers, SPARKS 2 and SP3, participated in automatic-server predictions in CASP6. The overall results for all as well as detailed performance in comparative modeling targets are presented. It is shown that both SPARKS 2 and SP3 are able to recognize their corresponding best templates for all easy comparative modeling targets. The alignment accuracy, however, is not always the best among all the servers. Possible factors are discussed. SPARKS 2 and SP3 fold recognition servers, as well as their executables, are freely available for all academic users on http://theory.med. buffalo.edu.
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