Journal
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS
Volume 69, Issue -, Pages 27-37Publisher
WILEY
DOI: 10.1002/prot.21662
Keywords
HA/TBM; structure prediction; comparative modeling; molecular replacement
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Funding
- Wellcome Trust [050211] Funding Source: Medline
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Models for target domains in the high accuracy template-based modeling category were assessed according to a number of criteria evaluating the quality of the main-chain prediction (GDT-HA), predicted sequence alignment (AL0), and side-chain rotameric state. A new criterion was introduced, the quality of the model for use in solving a crystal structure by molecular replacement. There is good evidence that modeling adds value to the template structures, particularly when multiple templates are available. However, when there is already a good template, few of the models are better for the purpose of molecular replacement.
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