4.5 Article

Hawkeye: an interactive visual analytics tool for genome assemblies

Journal

GENOME BIOLOGY
Volume 8, Issue 3, Pages -

Publisher

BIOMED CENTRAL LTD
DOI: 10.1186/gb-2007-8-3-r34

Keywords

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Funding

  1. NLM NIH HHS [R01-LM06845, R01 LM006845-08, R01 LM006845] Funding Source: Medline
  2. PHS HHS [HHSN266200400038C] Funding Source: Medline
  3. NATIONAL LIBRARY OF MEDICINE [R01LM006845] Funding Source: NIH RePORTER

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Genome sequencing remains an inexact science, and genome sequences can contain significant errors if they are not carefully examined. Hawkeye is our new visual analytics tool for genome assemblies, designed to aid in identifying and correcting assembly errors. Users can analyze all levels of an assembly along with summary statistics and assembly metrics, and are guided by a ranking component towards likely mis-assemblies. Hawkeye is freely available and released as part of the open source AMOS project http://amos.sourceforge.net/hawkeye.

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