Related references
Note: Only part of the references are listed.From Cascaded Catalytic Nucleic Acids to Enzyme-DNA Nanostructures: Controlling Reactivity, Sensing, Logic Operations, and Assembly of Complex Structures
Fuan Wang et al.
CHEMICAL REVIEWS (2014)
Docking Studies on DNA Intercalators
Yocheved Gilad et al.
JOURNAL OF CHEMICAL INFORMATION AND MODELING (2014)
An RNA aptamer possessing a novel monovalent cation-mediated fold inhibits lysozyme catalysis by inhibiting the binding of long natural substrates
Camille S. Padlan et al.
RNA (2014)
Chemistry and formulations for siRNA therapeutics
Andrzej Gallas et al.
CHEMICAL SOCIETY REVIEWS (2013)
Prediction of Noncovalent Drug/DNA Interaction Using Computational Docking Models: Studies With Over 1350 Launched Drugs
Ronald D. Snyder et al.
ENVIRONMENTAL AND MOLECULAR MUTAGENESIS (2013)
Molecular dynamics simulation of the induced-fit binding process of DNA aptamer and L-argininamide
Po-Hsun Lin et al.
BIOTECHNOLOGY JOURNAL (2012)
Functionalized DNA Nanostructures
Ofer I. Wilner et al.
CHEMICAL REVIEWS (2012)
Benzothiadiazoles as DNA intercalators: Docking and simulation
Paulo Augusto Netz
INTERNATIONAL JOURNAL OF QUANTUM CHEMISTRY (2012)
A DNA Nanostructure Platform for Directed Assembly of Synthetic Vaccines
Xiaowei Liu et al.
NANO LETTERS (2012)
Motion of transfer RNA from the A/T state into the A-site using docking and simulations
Thomas Caulfield et al.
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2012)
The Dynamic Nature of RNA as Key to Understanding Riboswitch Mechanisms
Andrea Haller et al.
ACCOUNTS OF CHEMICAL RESEARCH (2011)
Aptamer Modules as Sensors and Detectors
Michael Famulok et al.
ACCOUNTS OF CHEMICAL RESEARCH (2011)
Nucleic Acid Based Molecular Devices
Yamuna Krishnan et al.
ANGEWANDTE CHEMIE-INTERNATIONAL EDITION (2011)
Enantioselective CuII-Catalyzed Diels-Alder and Michael Addition Reactions in Water Using Bio-Inspired Triazacyclophane-Based Ligands
H. Bauke Albada et al.
EUROPEAN JOURNAL OF ORGANIC CHEMISTRY (2011)
Discovery of selective bioactive small molecules by targeting an RNA dynamic ensemble
Andrew C. Stelzer et al.
NATURE CHEMICAL BIOLOGY (2011)
Design and self-assembly of siRNA-functionalized RNA nanoparticles for use in automated nanomedicine
Kirill A. Afonin et al.
NATURE PROTOCOLS (2011)
DNA nanomedicine: Engineering DNA as a polymer for therapeutic and diagnostic applications
Michael J. Campolongo et al.
ADVANCED DRUG DELIVERY REVIEWS (2010)
Molecular dynamics analysis of the wild type and dF508 mutant structures of the human CFTR-nucleotide binding domain 1
Paola Bisignano et al.
BIOCHIMIE (2010)
Binary Probes for Nucleic Acid Analysis
Dmitry M. Kolpashchikov
CHEMICAL REVIEWS (2010)
Functional nucleic acid nanostructures and DNA machines
Carsten Teller et al.
CURRENT OPINION IN BIOTECHNOLOGY (2010)
HIV-1 TAR RNA Spontaneously Undergoes Relevant Apo-to-Holo Conformational Transitions in Molecular Dynamics and Constrained Geometrical Simulations
Simone Fulle et al.
JOURNAL OF CHEMICAL INFORMATION AND MODELING (2010)
Structural Dynamics of Thrombin-Binding DNA Aptamer d(GGTTGGTGTGGTTGG) Quadruplex DNA Studied by Large-Scale Explicit Solvent Simulations
Roman Reshetnikov et al.
JOURNAL OF CHEMICAL THEORY AND COMPUTATION (2010)
Development of DNA aptamers using Cell-SELEX
Kwame Sefah et al.
NATURE PROTOCOLS (2010)
The Chemical Biology of Aptamers
Guenter Mayer
ANGEWANDTE CHEMIE-INTERNATIONAL EDITION (2009)
The Dynamic Landscapes of RNA Architecture
Jose Almeida Cruz et al.
CELL (2009)
Docking Studies on DNA-Ligand Interactions: Building and Application of a Protocol To Identify the Binding Mode
Clarisse G. Ricci et al.
JOURNAL OF CHEMICAL INFORMATION AND MODELING (2009)
Single Stranded Loops of Quadruplex DNA As Key Benchmark for Testing Nucleic Acids Force Fields
Eva Fadrna et al.
JOURNAL OF CHEMICAL THEORY AND COMPUTATION (2009)
AutoDock4 and AutoDockTools4: Automated Docking with Selective Receptor Flexibility
Garrett M. Morris et al.
JOURNAL OF COMPUTATIONAL CHEMISTRY (2009)
The role of dynamic conformational ensembles in biomolecular recognition
David D. Boehr et al.
NATURE CHEMICAL BIOLOGY (2009)
Thermodynamic basis of chiral recognition in a DNA aptamer
Po-Hsun Lin et al.
PHYSICAL CHEMISTRY CHEMICAL PHYSICS (2009)
Targeting RNA with small molecules
Jason R. Thomas et al.
CHEMICAL REVIEWS (2008)
Docking to RNA via root-mean-square-deviation-driven energy minimization with flexible ligands and flexible targets
Christophe Guilbert et al.
JOURNAL OF CHEMICAL INFORMATION AND MODELING (2008)
Molecular docking of intercalators and groove-binders to nucleic acids using Autodock and Surflex
Patrick A. Holt et al.
JOURNAL OF CHEMICAL INFORMATION AND MODELING (2008)
DrugScoreRNA -: Knowledge-based scoring function to predict RNA-ligand interactions
Patrick Pfeffer et al.
JOURNAL OF CHEMICAL INFORMATION AND MODELING (2007)
Refinenement of the AMBER force field for nucleic acids:: Improving the description of α/γ conformers
Alberto Perez et al.
BIOPHYSICAL JOURNAL (2007)
DNA nanomachines
Jonathan Bath et al.
NATURE NANOTECHNOLOGY (2007)
A semiempirical free energy force field with charge-based desolvation
Ruth Huey et al.
JOURNAL OF COMPUTATIONAL CHEMISTRY (2007)
Electronic aptamer-based sensors
Itamar Willner et al.
ANGEWANDTE CHEMIE-INTERNATIONAL EDITION (2007)
Fast empirical pKa prediction by Ewald summation
Elmar Krieger et al.
JOURNAL OF MOLECULAR GRAPHICS & MODELLING (2006)
Molecular dynamics simulations of the orientation of Ni(II)•Gly-Gly-His and Ni(II)•Arg-Gly-His metallopeptide-DNA association
Ya-Yin Fang et al.
JOURNAL OF CHEMICAL THEORY AND COMPUTATION (2006)
Resolving the motional modes that code for RNA adaptation
Q Zhang et al.
SCIENCE (2006)
DNA-based machines
Moritz K. Beissenhirtz et al.
ORGANIC & BIOMOLECULAR CHEMISTRY (2006)
DNA architecture: from G to Z
Anh Tuan Phan et al.
CURRENT OPINION IN STRUCTURAL BIOLOGY (2006)
Molecular flexibility in ab initio drug docking to DNA: binding-site and binding-mode transitions in all-atom Monte Carlo simulations
R Rohs et al.
NUCLEIC ACIDS RESEARCH (2005)
DNA nanotubes self-assembled from triple-crossover tiles as templates for conductive nanowires
D Liu et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2004)
DNA logic gates
A Okamoto et al.
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2004)
Making optimal use of empirical energy functions: Force-field parameterization in crystal space
E Krieger et al.
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2004)
A point-charge force field for molecular mechanics simulations of proteins based on condensed-phase quantum mechanical calculations
Y Duan et al.
JOURNAL OF COMPUTATIONAL CHEMISTRY (2003)
A deoxyribozyme-based molecular automaton
MN Stojanovic et al.
NATURE BIOTECHNOLOGY (2003)
Fast, efficient generation of high-quality atomic charges. AM1-BCC model: II. Parameterization and validation
A Jakalian et al.
JOURNAL OF COMPUTATIONAL CHEMISTRY (2002)
A robust DNA mechanical device controlled by hybridization topology
H Yan et al.
NATURE (2002)
Particle mesh Ewald method for three-dimensional systems with two-dimensional periodicity
M Kawata et al.
CHEMICAL PHYSICS LETTERS (2001)