4.5 Article

Network-based methods for human disease gene prediction

Related references

Note: Only part of the references are listed.
Editorial Material Biochemistry & Molecular Biology

SnapShot: Protein-Protein Interaction Networks

Jan Seebacher et al.

Review Biochemistry & Molecular Biology

Interactome Networks and Human Disease

Marc Vidal et al.

Article Biochemical Research Methods

Next-generation sequencing to generate interactome datasets

Haiyuan Yu et al.

NATURE METHODS (2011)

Review Genetics & Heredity

Network medicine: a network-based approach to human disease

Albert-Laszlo Barabasi et al.

NATURE REVIEWS GENETICS (2011)

Article Biochemical Research Methods

Purification and characterization of HIV-human protein complexes

Stefanie Jaeger et al.

METHODS (2011)

Article Biochemical Research Methods

The power of protein interaction networks for associating genes with diseases

Saket Navlakha et al.

BIOINFORMATICS (2010)

Article Biochemical Research Methods

Genome-wide inferring gene-phenotype relationship by walking on the heterogeneous network

Yongjin Li et al.

BIOINFORMATICS (2010)

Review Biochemical Research Methods

Advances in translational bioinformatics: computational approaches for the hunting of disease genes

Maricel G. Kann

BRIEFINGS IN BIOINFORMATICS (2010)

Review Microbiology

Global approaches to study protein-protein interactions among viruses and hosts

Jorge Mendez-Rios et al.

FUTURE MICROBIOLOGY (2010)

Review Biochemical Research Methods

It's the machine that matters: Predicting gene function and phenotype from protein networks

Peggy I. Wang et al.

JOURNAL OF PROTEOMICS (2010)

Article Biochemical Research Methods

Associating Genes and Protein Complexes with Disease via Network Propagation

Oron Vanunu et al.

PLOS COMPUTATIONAL BIOLOGY (2010)

Article Biochemical Research Methods

Infrastructure for the life sciences: design and implementation of the UniProt website

Eric Jain et al.

BMC BIOINFORMATICS (2009)

Article Mathematical & Computational Biology

Identifying disease-specific genes based on their topological significance in protein networks

Zoltan Dezso et al.

BMC SYSTEMS BIOLOGY (2009)

Article Biochemistry & Molecular Biology

A Physical and Regulatory Map of Host-Influenza Interactions Reveals Pathways in H1N1 Infection

Sagi D. Shapira et al.

Article Biochemistry & Molecular Biology

A unifying view of 21st century systems biology

Marc Vidal

FEBS LETTERS (2009)

Article Biochemical Research Methods

A Network-Based Method for Predicting Disease-Causing Genes

Shaul Karni et al.

JOURNAL OF COMPUTATIONAL BIOLOGY (2009)

Article Biochemistry & Molecular Biology

Edgetic perturbation models of human inherited disorders

Quan Zhong et al.

MOLECULAR SYSTEMS BIOLOGY (2009)

Article Biotechnology & Applied Microbiology

Dynamic modularity in protein interaction networks predicts breast cancer outcome

Ian W. Taylor et al.

NATURE BIOTECHNOLOGY (2009)

Article Biochemical Research Methods

Literature-curated protein interaction datasets

Michael E. Cusick et al.

NATURE METHODS (2009)

Article Multidisciplinary Sciences

Influence of Protein Abundance on High-Throughput Protein-Protein Interaction Detection

Joseph Ivanic et al.

PLOS ONE (2009)

Article Biochemical Research Methods

A Dynamic Network Approach for the Study of Human Phenotypes

Cesar A. Hidalgo et al.

PLOS COMPUTATIONAL BIOLOGY (2009)

Article Biotechnology & Applied Microbiology

Multi-tissue coexpression networks reveal unexpected subnetworks associated with disease

Radu Dobrin et al.

GENOME BIOLOGY (2009)

Article Genetics & Heredity

Walking the interactome for prioritization of candidate disease genes

Sebastian Koehler et al.

AMERICAN JOURNAL OF HUMAN GENETICS (2008)

Article Genetics & Heredity

The Human Phenotype Ontology: A Tool for Annotating and Analyzing Human Hereditary Disease

Peter N. Robinson et al.

AMERICAN JOURNAL OF HUMAN GENETICS (2008)

Article Biology

A protein interaction network associated with asthma

Sohyun Hwang et al.

JOURNAL OF THEORETICAL BIOLOGY (2008)

Article Biochemistry & Molecular Biology

Hepatitis C virus infection protein network

B. de Chassey et al.

MOLECULAR SYSTEMS BIOLOGY (2008)

Article Biochemistry & Molecular Biology

Network-based global inference of human disease genes

Xuebing Wu et al.

MOLECULAR SYSTEMS BIOLOGY (2008)

Article Multidisciplinary Sciences

Variations in DNA elucidate molecular networks that cause disease

Yanqing Chen et al.

NATURE (2008)

Article Multidisciplinary Sciences

Network properties of genes harboring inherited disease mutations

Igor Feldman et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2008)

Article Biochemistry & Molecular Biology

An integrated approach to inferring gene-disease associations in humans

Predrag Radivojac et al.

PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2008)

Article Multidisciplinary Sciences

High-quality binary protein interaction map of the yeast interactome network

Haiyuan Yu et al.

SCIENCE (2008)

Review Multidisciplinary Sciences

Genetic Mapping in Human Disease

David Altshuler et al.

SCIENCE (2008)

Article Biochemistry & Molecular Biology

MIPS: analysis and annotation of genome information in 2007

H. W. Mewes et al.

NUCLEIC ACIDS RESEARCH (2008)

Review Oncology

Genetic susceptibility for breast cancer: How many more genes to be found?

R. A. Oldenburg et al.

CRITICAL REVIEWS IN ONCOLOGY HEMATOLOGY (2007)

Article Multidisciplinary Sciences

Probing genetic overlap among complex human phenotypes

Andrey Rzhetsky et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2007)

Article Genetics & Heredity

Network-based analysis of affected biological processes in type 2 diabetes models

Manway Liu et al.

PLOS GENETICS (2007)

Article Multidisciplinary Sciences

The human disease network

Kwang-Il Goh et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2007)

Article Biochemical Research Methods

A computational system to select candidate genes for complex human traits

Kyle J. Gaulton et al.

BIOINFORMATICS (2007)

Article Multidisciplinary Sciences

Epstein-Barr virus and virus human protein interaction maps

Michael A. Calderwood et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2007)

Article Biochemical Research Methods

The importance of bottlenecks in protein networks: Correlation with gene essentiality and expression dynamics

Haiyuan Yu et al.

PLOS COMPUTATIONAL BIOLOGY (2007)

Article Biotechnology & Applied Microbiology

A human phenome-interactome network of protein complexes implicated in genetic disorders

Kasper Lage et al.

NATURE BIOTECHNOLOGY (2007)

Article Biochemistry & Molecular Biology

Large-scale mapping of human protein-protein interactions by mass spectrometry

Rob M. Ewing et al.

MOLECULAR SYSTEMS BIOLOGY (2007)

Article Biochemistry & Molecular Biology

MINT: the molecular INTeraction database

Andrew Chatr-aryamontri et al.

NUCLEIC ACIDS RESEARCH (2007)

Article Biochemistry & Molecular Biology

Positional artifacts in microarrays: experimental verification and construction of COP, an automated detection tool

Haiyuan Yu et al.

NUCLEIC ACIDS RESEARCH (2007)

Article Biochemistry & Molecular Biology

STRING 7 - recent developments in the integration and prediction of protein interactions

Christian von Mering et al.

NUCLEIC ACIDS RESEARCH (2007)

Article Biochemistry & Molecular Biology

IntAct - open source resource for molecular interaction data

S. Kerrien et al.

NUCLEIC ACIDS RESEARCH (2007)

Review Biochemistry & Molecular Biology

Network-based prediction of protein function

Roded Sharan et al.

MOLECULAR SYSTEMS BIOLOGY (2007)

Review Genetics & Heredity

The modular nature of genetic diseases

M. Oti et al.

CLINICAL GENETICS (2007)

Review Genetics & Heredity

Genome-wide association studies provide new insights into type 2 diabetes aetiology

Timothy M. Frayling

NATURE REVIEWS GENETICS (2007)

Article Biochemical Research Methods

Global topological features of cancer proteins in the human interactome

Pall F. Jonsson et al.

BIOINFORMATICS (2006)

Article Genetics & Heredity

Predicting disease genes using protein-protein interactions

M. Oti et al.

JOURNAL OF MEDICAL GENETICS (2006)

Article Genetics & Heredity

Reconstruction of a functional human gene network, with an application for prioritizing positional candidate genes

Lude Franke et al.

AMERICAN JOURNAL OF HUMAN GENETICS (2006)

Article Biochemistry & Molecular Biology

A text-mining analysis of the human phenome

MA van Driel et al.

EUROPEAN JOURNAL OF HUMAN GENETICS (2006)

Article Biotechnology & Applied Microbiology

Gene prioritization through genomic data fusion

S Aerts et al.

NATURE BIOTECHNOLOGY (2006)

Article Biochemical Research Methods

SUSPECTS: enabling fast and effective prioritization of positional candidates

EA Adie et al.

BIOINFORMATICS (2006)

Article Multidisciplinary Sciences

Herpesviral protein networks and their interaction with the human proteome

P Uetz et al.

SCIENCE (2006)

Article Biochemistry & Molecular Biology

BioGRID: a general repository for interaction datasets

Chris Stark et al.

NUCLEIC ACIDS RESEARCH (2006)

Article Biochemistry & Molecular Biology

From genomics to chemical genomics: new developments in KEGG

Minoru Kanehisa et al.

NUCLEIC ACIDS RESEARCH (2006)

Article Multidisciplinary Sciences

Towards a proteome-scale map of the human protein-protein interaction network

JF Rual et al.

NATURE (2005)

Article Biochemistry & Molecular Biology

A human protein-protein interaction network:: A resource for annotating the proteome

U Stelzl et al.

Article Biochemical Research Methods

Online predicted human interaction database

KR Brown et al.

BIOINFORMATICS (2005)

Article Biochemical Research Methods

Speeding disease gene discovery by sequence based candidate prioritization

EA Adie et al.

BMC BIOINFORMATICS (2005)

Article Biochemistry & Molecular Biology

Reactome: a knowledgebase of biological pathways

G Joshi-Tope et al.

NUCLEIC ACIDS RESEARCH (2005)

Review Genetics & Heredity

From syndrome families to functional genomics

HG Brunner et al.

NATURE REVIEWS GENETICS (2004)

Article Biochemistry & Molecular Biology

The Database of Interacting Proteins: 2004 update

L Salwinski et al.

NUCLEIC ACIDS RESEARCH (2004)

Article Multidisciplinary Sciences

Molecular triangulation: Bridging linkage and molecular-network information for identifying candidate genes in Alzheimer's disease

M Krauthammer et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2004)

Article Multidisciplinary Sciences

Lethality and centrality in protein networks

H Jeong et al.

NATURE (2001)

Article Biochemistry & Molecular Biology

BIND - The Biomolecular Interaction Network Database

GD Bader et al.

NUCLEIC ACIDS RESEARCH (2001)