Journal
JOURNAL OF CLINICAL VIROLOGY
Volume 73, Issue -, Pages 89-94Publisher
ELSEVIER SCIENCE BV
DOI: 10.1016/j.jcv.2015.10.020
Keywords
Ebolavirus; Polymerase; Nucleotide analogues; Modeling; Binding affinity
Categories
Ask authors/readers for more resources
Background and objective: The urgency of ebolavirus drug development is obvious in light of the current local epidemic in Western Africa with high morbidity and a risk of wider spread. We present an in silico study as a first step to identify inhibitors of ebolavirus polymerase activity based on approved antiviral nucleotide analogues. Study design: Since a structure model of the ebolavirus polymerase is lacking, we performed combined homology and ab initio modeling and report a similarity to known polymerases of human enterovirus, bovine diarrhea virus and foot-and-mouth disease virus. This facilitated the localization of a nucleotide binding domain in the ebolavirus polymerase. We next performed molecular docking studies with nucleotides (ATP, CT P, GTP and UTP) and nucleotide analogues, including a variety of approved antiviral drugs. Results and conclusions: Specific combinations of nucleotide analogues significantly reduce the ligand-protein interaction energies of the ebolavirus polymerase for natural nucleotides. Any nucleotide analogue on its own did not reduce ligand-protein interaction energies. This prediction encourages specific drug testing efforts and guides future strategies to inhibit ebolavirus replication. (C) 2015 Elsevier B.V. All rights reserved.
Authors
I am an author on this paper
Click your name to claim this paper and add it to your profile.
Reviews
Recommended
No Data Available