Related references
Note: Only part of the references are listed.Microbial tolerance engineering toward biochemical production: from lignocellulose to products
Hua Ling et al.
CURRENT OPINION IN BIOTECHNOLOGY (2014)
The YEASTRACT database: an upgraded information system for the analysis of gene and genomic transcription regulation in Saccharomyces cerevisiae
Miguel Cacho Teixeira et al.
NUCLEIC ACIDS RESEARCH (2014)
Assessment of high-confidence protein-protein interactome in yeast
Kubra Karagoz et al.
COMPUTATIONAL BIOLOGY AND CHEMISTRY (2013)
Transcriptional remodelling in response to changing copper levels in the Wilson and Menkes disease model of Saccharomyces cerevisiae
Ayca Cankorur-Cetinkaya et al.
MOLECULAR BIOSYSTEMS (2013)
Improvement of ethanol production by ethanol-tolerant Saccharomyces cerevisiae UVNR56
Sutticha Na-Ranong Thammasittirong et al.
SPRINGERPLUS (2013)
Evaluation of industrial Saccharomyces cerevisiae strains for ethanol production from biomass
Ceyda Kasavi et al.
BIOMASS & BIOENERGY (2012)
Cell growth and cell cycle in Saccharomyces cerevisiae: Basic regulatory design and protein-protein interaction network
Lilia Alberghina et al.
BIOTECHNOLOGY ADVANCES (2012)
Identification of RCN1 and RSA3 as ethanol-tolerant genes in Saccharomyces cerevisiae using a high copy barcoded library
Michael J. Anderson et al.
FEMS YEAST RESEARCH (2012)
Metabolic responses to ethanol in Saccharomyces cerevisiae using a gas chromatography tandem mass spectrometry-based metabolomics approach
Hao Li et al.
INTERNATIONAL JOURNAL OF BIOCHEMISTRY & CELL BIOLOGY (2012)
Perturbation-based analysis and modeling of combinatorial regulation in the yeast sulfur assimilation pathway
R. Scott McIsaac et al.
MOLECULAR BIOLOGY OF THE CELL (2012)
Dissecting DNA damage response pathways by analysing protein localization and abundance changes during DNA replication stress
Johnny M. Tkach et al.
NATURE CELL BIOLOGY (2012)
Laboratory evolution of copper tolerant yeast strains
Giusy Manuela Adamo et al.
MICROBIAL CELL FACTORIES (2012)
A Novel Strategy to Construct Yeast Saccharomyces cerevisiae Strains for Very High Gravity Fermentation
Xianglin Tao et al.
PLOS ONE (2012)
Total fatty acid content of the plasma membrane of Saccharomyces cerevisiae is more responsible for ethanol tolerance than the degree of unsaturation
Hyun-Soo Kim et al.
BIOTECHNOLOGY LETTERS (2011)
Integration of breast cancer gene signatures based on graph centrality
Jianxin Wang et al.
BMC SYSTEMS BIOLOGY (2011)
Interactome Networks and Human Disease
Marc Vidal et al.
CELL (2011)
A novel integrative network approach to understand the interplay between cardiovascular disease and other complex disorders
Deniz Rende et al.
MOLECULAR BIOSYSTEMS (2011)
Network medicine: a network-based approach to human disease
Albert-Laszlo Barabasi et al.
NATURE REVIEWS GENETICS (2011)
Using graph theory to analyze biological networks
Georgios A. Pavlopoulos et al.
BIODATA MINING (2011)
Mechanisms of ethanol tolerance in Saccharomyces cerevisiae
Menggen Ma et al.
APPLIED MICROBIOLOGY AND BIOTECHNOLOGY (2010)
Exploiting Natural Variation in Saccharomyces cerevisiae to Identify Genes for Increased Ethanol Resistance
Jeffrey A. Lewis et al.
GENETICS (2010)
Transcriptome analysis of differential responses of diploid and haploid yeast to ethanol stress
Bing-Zhi Li et al.
JOURNAL OF BIOTECHNOLOGY (2010)
Identification of gene targets eliciting improved alcohol tolerance in Saccharomyces cerevisiae through inverse metabolic engineering
Min-Eui Hong et al.
JOURNAL OF BIOTECHNOLOGY (2010)
BioMet Toolbox: genome-wide analysis of metabolism
Marija Cvijovic et al.
NUCLEIC ACIDS RESEARCH (2010)
Eigenvector Centrality Mapping for Analyzing Connectivity Patterns in fMRI Data of the Human Brain
Gabriele Lohmann et al.
PLOS ONE (2010)
AmiGO: online access to ontology and annotation data
Seth Carbon et al.
BIOINFORMATICS (2009)
Analysis of adaptation to high ethanol concentration in Saccharomyces cerevisiae using DNA microarray
Thai Nho Dinh et al.
BIOPROCESS AND BIOSYSTEMS ENGINEERING (2009)
Comprehensive phenotypic analysis for identification of genes affecting growth under ethanol stress in Saccharomyces cerevisiae
Katsunori Yoshikawa et al.
FEMS YEAST RESEARCH (2009)
Genetic manipulation of HSP26 and YHR087W stress genes may improve fermentative behaviour in wine yeasts under vinification conditions
E. Jimenez-Marti et al.
INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY (2009)
Ethanol fermentation technologies from sugar and starch feedstocks
F. W. Bai et al.
BIOTECHNOLOGY ADVANCES (2008)
The topology of the bacterial co-conserved protein network and its implications for predicting protein function
Anis Karimpour-Fard et al.
BMC GENOMICS (2008)
Architecture of transcriptional regulatory circuits is knitted over the topology of bio-molecular interaction networks
Ana Paula Oliveira et al.
BMC SYSTEMS BIOLOGY (2008)
Modularity in the genetic disease-phenotype network
Xingpeng Jiang et al.
FEBS LETTERS (2008)
Stress-activated Genomic Expression Changes Serve a Preparative Role for Impending Stress in Yeast
David B. Berry et al.
MOLECULAR BIOLOGY OF THE CELL (2008)
Selection and optimization of microbial hosts for biofuels production
Curt R. Fischer et al.
METABOLIC ENGINEERING (2008)
Shortest-Path Network Analysis Is a Useful Approach toward Identifying Genetic Determinants of Longevity
J. R. Managbanag et al.
PLOS ONE (2008)
Computing topological parameters of biological networks
Yassen Assenov et al.
BIOINFORMATICS (2008)
Understanding signaling in yeast:: Insights from network analysis
K. Yalcin Arga et al.
BIOTECHNOLOGY AND BIOENGINEERING (2007)
Identification of target genes conferring ethanol stress tolerance to Saccharomyces cerevisiae based on DNA microarray data analysis
Takashi Hirasawa et al.
JOURNAL OF BIOTECHNOLOGY (2007)
Disruption of URA7 and GAL6 improves the ethanol tolerance and fermentation capacity of Saccharomyces cerevisiae
Hisashi Yazawa et al.
YEAST (2007)
Transcription factor modularity in a gene-centered C. elegans core neuronal protein-DNA interaction network
Vanessa Vermeirssen et al.
GENOME RESEARCH (2007)
Identification of overlapping community structure in complex networks using fuzzy c-means clustering
Shihua Zhang et al.
PHYSICA A-STATISTICAL MECHANICS AND ITS APPLICATIONS (2007)
In search of the biological significance of modular structures in protein networks
Zhi Wang et al.
PLOS COMPUTATIONAL BIOLOGY (2007)
An algorithm for modularity analysis of directed and weighted biological networks based on edge-betweenness centrality
Jeongah Yoon et al.
BIOINFORMATICS (2006)
Engineering yeast transcription machinery for improved ethanol tolerance and production
Hal Alper et al.
SCIENCE (2006)
Modularity of the transcriptional response of protein complexes in yeast
Nicolas Simonis et al.
JOURNAL OF MOLECULAR BIOLOGY (2006)
Detecting functional modules in the yeast protein-protein interaction network
Jingchun Chen et al.
BIOINFORMATICS (2006)
The genome-wide screening of yeast deletion mutants to identify the genes required for tolerance to ethanol and other alcohols
Katsuhide Fujita et al.
FEMS YEAST RESEARCH (2006)
Genome-wide identification of genes required for growth of Saccharomyces cerevisiae under ethanol stress
F van Voorst et al.
YEAST (2006)
BioGRID: a general repository for interaction datasets
Chris Stark et al.
NUCLEIC ACIDS RESEARCH (2006)
Communication between levels of transcriptional control improves robustness and adaptivity
Alexander M. Tsankov et al.
MOLECULAR SYSTEMS BIOLOGY (2006)
An evolutionary scenario for one of the largest yeast gene families
L Despons et al.
TRENDS IN GENETICS (2006)
BiNGO: a Cytoscape plugin to assess overrepresentation of Gene Ontology categories in Biological Networks
S Maere et al.
BIOINFORMATICS (2005)
A two-hybrid screen of the yeast Proteome for Hsp90 interactors uncovers a novel Hsp90 chaperone requirement in the activity of a stress-activated mitogen-activated protein kinase, Slt2p (Mpk1p)
SH Millson et al.
EUKARYOTIC CELL (2005)
Uncovering transcriptional regulation of metabolism by using metabolic network topology
KR Patil et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2005)
Effect of ethanol on cell growth of budding yeast: Genes that are important for cell growth in the presence of ethanol
S Kubota et al.
BIOSCIENCE BIOTECHNOLOGY AND BIOCHEMISTRY (2004)
Revealing modularity and organization in the yeast molecular network by integrated analysis of highly heterogeneous genomewide data
A Tanay et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2004)
affy -: analysis of Affymetrix GeneChip data at the probe level
L Gautier et al.
BIOINFORMATICS (2004)
Continuous ethanol production and evaluation of yeast cell lysis and viability loss under very high gravity medium conditions
FW Bai et al.
JOURNAL OF BIOTECHNOLOGY (2004)
Bioconductor: open software development for computational biology and bioinformatics
RC Gentleman et al.
GENOME BIOLOGY (2004)
Topology models for 37 Saccharomyces cerevisiae membrane proteins based on C-terminal reporter fusions and predictions
H Kim et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2003)
A comparison of normalization methods for high density oligonucleotide array data based on variance and bias
BM Bolstad et al.
BIOINFORMATICS (2003)
An automated method for finding molecular complexes in large protein interaction networks
GD Bader et al.
BMC BIOINFORMATICS (2003)
Cytoscape: A software environment for integrated models of biomolecular interaction networks
P Shannon et al.
GENOME RESEARCH (2003)
Hierarchical organization of modularity in metabolic networks
E Ravasz et al.
SCIENCE (2002)
Functional profiling of the Saccharomyces cerevisiae genome
G Giaever et al.
NATURE (2002)
Comparative assessment of large-scale data sets of protein-protein interactions
C von Mering et al.
NATURE (2002)