4.0 Article

A system based network approach to ethanol tolerance in Saccharomyces cerevisiae

Related references

Note: Only part of the references are listed.
Review Biochemical Research Methods

Microbial tolerance engineering toward biochemical production: from lignocellulose to products

Hua Ling et al.

CURRENT OPINION IN BIOTECHNOLOGY (2014)

Article Biology

Assessment of high-confidence protein-protein interactome in yeast

Kubra Karagoz et al.

COMPUTATIONAL BIOLOGY AND CHEMISTRY (2013)

Article Biochemistry & Molecular Biology

Transcriptional remodelling in response to changing copper levels in the Wilson and Menkes disease model of Saccharomyces cerevisiae

Ayca Cankorur-Cetinkaya et al.

MOLECULAR BIOSYSTEMS (2013)

Article Multidisciplinary Sciences

Improvement of ethanol production by ethanol-tolerant Saccharomyces cerevisiae UVNR56

Sutticha Na-Ranong Thammasittirong et al.

SPRINGERPLUS (2013)

Article Agricultural Engineering

Evaluation of industrial Saccharomyces cerevisiae strains for ethanol production from biomass

Ceyda Kasavi et al.

BIOMASS & BIOENERGY (2012)

Review Biotechnology & Applied Microbiology

Cell growth and cell cycle in Saccharomyces cerevisiae: Basic regulatory design and protein-protein interaction network

Lilia Alberghina et al.

BIOTECHNOLOGY ADVANCES (2012)

Article Biotechnology & Applied Microbiology

Identification of RCN1 and RSA3 as ethanol-tolerant genes in Saccharomyces cerevisiae using a high copy barcoded library

Michael J. Anderson et al.

FEMS YEAST RESEARCH (2012)

Article Biochemistry & Molecular Biology

Metabolic responses to ethanol in Saccharomyces cerevisiae using a gas chromatography tandem mass spectrometry-based metabolomics approach

Hao Li et al.

INTERNATIONAL JOURNAL OF BIOCHEMISTRY & CELL BIOLOGY (2012)

Article Biotechnology & Applied Microbiology

Laboratory evolution of copper tolerant yeast strains

Giusy Manuela Adamo et al.

MICROBIAL CELL FACTORIES (2012)

Article Mathematical & Computational Biology

Integration of breast cancer gene signatures based on graph centrality

Jianxin Wang et al.

BMC SYSTEMS BIOLOGY (2011)

Review Biochemistry & Molecular Biology

Interactome Networks and Human Disease

Marc Vidal et al.

Review Genetics & Heredity

Network medicine: a network-based approach to human disease

Albert-Laszlo Barabasi et al.

NATURE REVIEWS GENETICS (2011)

Review Mathematical & Computational Biology

Using graph theory to analyze biological networks

Georgios A. Pavlopoulos et al.

BIODATA MINING (2011)

Review Biotechnology & Applied Microbiology

Mechanisms of ethanol tolerance in Saccharomyces cerevisiae

Menggen Ma et al.

APPLIED MICROBIOLOGY AND BIOTECHNOLOGY (2010)

Article Biotechnology & Applied Microbiology

Transcriptome analysis of differential responses of diploid and haploid yeast to ethanol stress

Bing-Zhi Li et al.

JOURNAL OF BIOTECHNOLOGY (2010)

Article Biochemistry & Molecular Biology

BioMet Toolbox: genome-wide analysis of metabolism

Marija Cvijovic et al.

NUCLEIC ACIDS RESEARCH (2010)

Article Biochemical Research Methods

AmiGO: online access to ontology and annotation data

Seth Carbon et al.

BIOINFORMATICS (2009)

Article Biotechnology & Applied Microbiology

Analysis of adaptation to high ethanol concentration in Saccharomyces cerevisiae using DNA microarray

Thai Nho Dinh et al.

BIOPROCESS AND BIOSYSTEMS ENGINEERING (2009)

Article Biotechnology & Applied Microbiology

Comprehensive phenotypic analysis for identification of genes affecting growth under ethanol stress in Saccharomyces cerevisiae

Katsunori Yoshikawa et al.

FEMS YEAST RESEARCH (2009)

Article Food Science & Technology

Genetic manipulation of HSP26 and YHR087W stress genes may improve fermentative behaviour in wine yeasts under vinification conditions

E. Jimenez-Marti et al.

INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY (2009)

Review Biotechnology & Applied Microbiology

Ethanol fermentation technologies from sugar and starch feedstocks

F. W. Bai et al.

BIOTECHNOLOGY ADVANCES (2008)

Article Biotechnology & Applied Microbiology

The topology of the bacterial co-conserved protein network and its implications for predicting protein function

Anis Karimpour-Fard et al.

BMC GENOMICS (2008)

Article Mathematical & Computational Biology

Architecture of transcriptional regulatory circuits is knitted over the topology of bio-molecular interaction networks

Ana Paula Oliveira et al.

BMC SYSTEMS BIOLOGY (2008)

Article Biochemistry & Molecular Biology

Modularity in the genetic disease-phenotype network

Xingpeng Jiang et al.

FEBS LETTERS (2008)

Article Cell Biology

Stress-activated Genomic Expression Changes Serve a Preparative Role for Impending Stress in Yeast

David B. Berry et al.

MOLECULAR BIOLOGY OF THE CELL (2008)

Review Biotechnology & Applied Microbiology

Selection and optimization of microbial hosts for biofuels production

Curt R. Fischer et al.

METABOLIC ENGINEERING (2008)

Article Biochemical Research Methods

Computing topological parameters of biological networks

Yassen Assenov et al.

BIOINFORMATICS (2008)

Article Biotechnology & Applied Microbiology

Understanding signaling in yeast:: Insights from network analysis

K. Yalcin Arga et al.

BIOTECHNOLOGY AND BIOENGINEERING (2007)

Article Biotechnology & Applied Microbiology

Identification of target genes conferring ethanol stress tolerance to Saccharomyces cerevisiae based on DNA microarray data analysis

Takashi Hirasawa et al.

JOURNAL OF BIOTECHNOLOGY (2007)

Article Biochemistry & Molecular Biology

Transcription factor modularity in a gene-centered C. elegans core neuronal protein-DNA interaction network

Vanessa Vermeirssen et al.

GENOME RESEARCH (2007)

Article Physics, Multidisciplinary

Identification of overlapping community structure in complex networks using fuzzy c-means clustering

Shihua Zhang et al.

PHYSICA A-STATISTICAL MECHANICS AND ITS APPLICATIONS (2007)

Article Biochemical Research Methods

In search of the biological significance of modular structures in protein networks

Zhi Wang et al.

PLOS COMPUTATIONAL BIOLOGY (2007)

Article Biochemistry & Molecular Biology

Modularity of the transcriptional response of protein complexes in yeast

Nicolas Simonis et al.

JOURNAL OF MOLECULAR BIOLOGY (2006)

Article Biochemical Research Methods

Detecting functional modules in the yeast protein-protein interaction network

Jingchun Chen et al.

BIOINFORMATICS (2006)

Article Biotechnology & Applied Microbiology

The genome-wide screening of yeast deletion mutants to identify the genes required for tolerance to ethanol and other alcohols

Katsuhide Fujita et al.

FEMS YEAST RESEARCH (2006)

Article Biochemistry & Molecular Biology

BioGRID: a general repository for interaction datasets

Chris Stark et al.

NUCLEIC ACIDS RESEARCH (2006)

Article Biochemistry & Molecular Biology

Communication between levels of transcriptional control improves robustness and adaptivity

Alexander M. Tsankov et al.

MOLECULAR SYSTEMS BIOLOGY (2006)

Article Genetics & Heredity

An evolutionary scenario for one of the largest yeast gene families

L Despons et al.

TRENDS IN GENETICS (2006)

Article Multidisciplinary Sciences

Uncovering transcriptional regulation of metabolism by using metabolic network topology

KR Patil et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2005)

Article Biochemistry & Molecular Biology

Effect of ethanol on cell growth of budding yeast: Genes that are important for cell growth in the presence of ethanol

S Kubota et al.

BIOSCIENCE BIOTECHNOLOGY AND BIOCHEMISTRY (2004)

Article Multidisciplinary Sciences

Revealing modularity and organization in the yeast molecular network by integrated analysis of highly heterogeneous genomewide data

A Tanay et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2004)

Article Biochemical Research Methods

affy -: analysis of Affymetrix GeneChip data at the probe level

L Gautier et al.

BIOINFORMATICS (2004)

Article Biotechnology & Applied Microbiology

Bioconductor: open software development for computational biology and bioinformatics

RC Gentleman et al.

GENOME BIOLOGY (2004)

Article Biochemistry & Molecular Biology

Topology models for 37 Saccharomyces cerevisiae membrane proteins based on C-terminal reporter fusions and predictions

H Kim et al.

JOURNAL OF BIOLOGICAL CHEMISTRY (2003)

Article Biochemical Research Methods

An automated method for finding molecular complexes in large protein interaction networks

GD Bader et al.

BMC BIOINFORMATICS (2003)

Article Biochemistry & Molecular Biology

Cytoscape: A software environment for integrated models of biomolecular interaction networks

P Shannon et al.

GENOME RESEARCH (2003)

Article Multidisciplinary Sciences

Hierarchical organization of modularity in metabolic networks

E Ravasz et al.

SCIENCE (2002)

Article Multidisciplinary Sciences

Functional profiling of the Saccharomyces cerevisiae genome

G Giaever et al.

NATURE (2002)

Article Multidisciplinary Sciences

Comparative assessment of large-scale data sets of protein-protein interactions

C von Mering et al.

NATURE (2002)