4.0 Article

Network component analysis provides quantitative insights on an Arabidopsis transcription factor-gene regulatory network

Related references

Note: Only part of the references are listed.
Article Biochemical Research Methods

TFinDit: transcription factor-DNA interaction data depository

Daniel Turner et al.

BMC BIOINFORMATICS (2012)

Article Mathematical & Computational Biology

Crosstalk between transcription factors and microRNAs in human protein interaction network

Chen-Ching Lin et al.

BMC SYSTEMS BIOLOGY (2012)

Review Developmental Biology

The poetry of reproduction: the role of LEAFY in Arabidopsis thaliana flower formation

Nirodhini S. Siriwardana et al.

INTERNATIONAL JOURNAL OF DEVELOPMENTAL BIOLOGY (2012)

Article Multidisciplinary Sciences

Global Network Reorganization During Dynamic Adaptations of Bacillus subtilis Metabolism

Joerg Martin Buescher et al.

SCIENCE (2012)

Article Mathematical & Computational Biology

Regulatory coordination of clustered microRNAs based on microRNA-transcription factor regulatory network

Jin Wang et al.

BMC SYSTEMS BIOLOGY (2011)

Article Developmental Biology

LATE MERISTEM IDENTITY2 acts together with LEAFY to activate APETALA1

Jennifer J. Pastore et al.

DEVELOPMENT (2011)

Article Biochemical Research Methods

BoolNet-an R package for generation, reconstruction and analysis of Boolean networks

Christoph Muessel et al.

BIOINFORMATICS (2010)

Review Plant Sciences

Omics meet networks - using systems approaches to infer regulatory networks in plants

Miguel A. Moreno-Risueno et al.

CURRENT OPINION IN PLANT BIOLOGY (2010)

Review Developmental Biology

Challenges for modeling global gene regulatory networks during development: Insights from Drosophila

Bartek Wilczynski et al.

DEVELOPMENTAL BIOLOGY (2010)

Article Biotechnology & Applied Microbiology

Moonlighting function of glycerol kinase causes systems-level changes in rat hepatoma cells

Ganesh Sriram et al.

METABOLIC ENGINEERING (2010)

Review Cell Biology

Floral organ identity: 20 years of ABCs

Barry Causier et al.

SEMINARS IN CELL & DEVELOPMENTAL BIOLOGY (2010)

Article Multidisciplinary Sciences

Gene expression map of the Arabidopsis shoot apical meristem stem cell niche

Ram Kishor Yadav et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2009)

Article Biochemical Research Methods

Inferring Binding Energies from Selected Binding Sites

Yue Zhao et al.

PLOS COMPUTATIONAL BIOLOGY (2009)

Review Cell Biology

Systems Approaches to Identifying Gene Regulatory Networks in Plants

Terri A. Long et al.

ANNUAL REVIEW OF CELL AND DEVELOPMENTAL BIOLOGY (2008)

Article Biochemistry & Molecular Biology

Computational models reconstruct gene regulatory networks

Anastasios Bezerianos et al.

MOLECULAR BIOSYSTEMS (2008)

Review Cell Biology

Modelling and analysis of gene regulatory networks

Guy Karlebach et al.

NATURE REVIEWS MOLECULAR CELL BIOLOGY (2008)

Article Multidisciplinary Sciences

Integrated network analysis identifies nitric oxide response networks and dihydroxyacid dehydratase as a crucial target in Escherichia coli

Daniel R. Hyduke et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2007)

Review Plant Sciences

Gene regulatory network models for plant development

Elena R. Alvarez-Buylla et al.

CURRENT OPINION IN PLANT BIOLOGY (2007)

Article Biochemical Research Methods

Transcriptome network component analysis with limited microarray data

Simon J. Galbraith et al.

BIOINFORMATICS (2006)

Article Biochemical Research Methods

Using a state-space model with hidden variables to infer transcription factor activities

Z Li et al.

BIOINFORMATICS (2006)

Article Biochemistry & Molecular Biology

A global regulatory role of gluconeogenic genes in Escherichia coli revealed by transcriptome network analysis

KC Kao et al.

JOURNAL OF BIOLOGICAL CHEMISTRY (2005)

Review Genetics & Heredity

Single-gene disorders: What role could moonlighting enzymes play?

G Sriram et al.

AMERICAN JOURNAL OF HUMAN GENETICS (2005)

Review Cell Biology

Transcriptional regulation by the numbers: models

L Bintu et al.

CURRENT OPINION IN GENETICS & DEVELOPMENT (2005)

Article Multidisciplinary Sciences

Genomic identification of direct target genes of LEAFY

DA William et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2004)

Article Multidisciplinary Sciences

Transcriptome-based determination of multiple transcription regulator activities in Escherichia coli by using network component analysis

KC Kao et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2004)

Review Biochemistry & Molecular Biology

Structure and evolution of transcriptional regulatory networks

MM Babu et al.

CURRENT OPINION IN STRUCTURAL BIOLOGY (2004)

Article Multidisciplinary Sciences

Network component analysis: Reconstruction of regulatory signals in biological systems

JC Liao et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2003)

Review Pharmacology & Pharmacy

Genetic network modeling

EP van Someren et al.

PHARMACOGENOMICS (2002)

Review Biochemical Research Methods

Modeling and simulation of genetic regulatory systems: A literature review

H De Jong

JOURNAL OF COMPUTATIONAL BIOLOGY (2002)

Article Biochemical Research Methods

Thermodynamic database for protein-nucleic acid interactions (ProNIT)

P Prabakaran et al.

BIOINFORMATICS (2001)

Review Plant Sciences

Development of floral organ identity: stories from the MADS house

G Theissen

CURRENT OPINION IN PLANT BIOLOGY (2001)

Review Plant Sciences

A genomic perspective on plant transcription factors

JL Riechmann et al.

CURRENT OPINION IN PLANT BIOLOGY (2000)