Related references
Note: Only part of the references are listed.Identification of pathways directly regulated by SHORT VEGETATIVE PHASE during vegetative and reproductive development in Arabidopsis
Veronica Gregis et al.
GENOME BIOLOGY (2013)
TFinDit: transcription factor-DNA interaction data depository
Daniel Turner et al.
BMC BIOINFORMATICS (2012)
Multiple independent analyses reveal only transcription factors as an enriched functional class associated with microRNAs
Larry Croft et al.
BMC SYSTEMS BIOLOGY (2012)
Crosstalk between transcription factors and microRNAs in human protein interaction network
Chen-Ching Lin et al.
BMC SYSTEMS BIOLOGY (2012)
The poetry of reproduction: the role of LEAFY in Arabidopsis thaliana flower formation
Nirodhini S. Siriwardana et al.
INTERNATIONAL JOURNAL OF DEVELOPMENTAL BIOLOGY (2012)
Determining PTEN Functional Status by Network Component Deduced Transcription Factor Activities
Linh M. Tran et al.
PLOS ONE (2012)
Global Network Reorganization During Dynamic Adaptations of Bacillus subtilis Metabolism
Joerg Martin Buescher et al.
SCIENCE (2012)
Regulatory coordination of clustered microRNAs based on microRNA-transcription factor regulatory network
Jin Wang et al.
BMC SYSTEMS BIOLOGY (2011)
LATE MERISTEM IDENTITY2 acts together with LEAFY to activate APETALA1
Jennifer J. Pastore et al.
DEVELOPMENT (2011)
BoolNet-an R package for generation, reconstruction and analysis of Boolean networks
Christoph Muessel et al.
BIOINFORMATICS (2010)
Omics meet networks - using systems approaches to infer regulatory networks in plants
Miguel A. Moreno-Risueno et al.
CURRENT OPINION IN PLANT BIOLOGY (2010)
Challenges for modeling global gene regulatory networks during development: Insights from Drosophila
Bartek Wilczynski et al.
DEVELOPMENTAL BIOLOGY (2010)
Moonlighting function of glycerol kinase causes systems-level changes in rat hepatoma cells
Ganesh Sriram et al.
METABOLIC ENGINEERING (2010)
Floral organ identity: 20 years of ABCs
Barry Causier et al.
SEMINARS IN CELL & DEVELOPMENTAL BIOLOGY (2010)
Thermodynamics-Based Models of Transcriptional Regulation by Enhancers: The Roles of Synergistic Activation, Cooperative Binding and Short-Range Repression
Xin He et al.
PLOS COMPUTATIONAL BIOLOGY (2010)
Gene expression map of the Arabidopsis shoot apical meristem stem cell niche
Ram Kishor Yadav et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2009)
Inferring Binding Energies from Selected Binding Sites
Yue Zhao et al.
PLOS COMPUTATIONAL BIOLOGY (2009)
Systems Approaches to Identifying Gene Regulatory Networks in Plants
Terri A. Long et al.
ANNUAL REVIEW OF CELL AND DEVELOPMENTAL BIOLOGY (2008)
Fast network component analysis (FastNCA) for gene regulatory network reconstruction from microarray data
Chunqi Chang et al.
BIOINFORMATICS (2008)
Computational models reconstruct gene regulatory networks
Anastasios Bezerianos et al.
MOLECULAR BIOSYSTEMS (2008)
Modelling and analysis of gene regulatory networks
Guy Karlebach et al.
NATURE REVIEWS MOLECULAR CELL BIOLOGY (2008)
AGAMOUS-LIKE24 and SHORT VEGETATIVE PHASE determine floral meristem identity in Arabidopsis
Veronica Gregis et al.
PLANT JOURNAL (2008)
Integrated network analysis identifies nitric oxide response networks and dihydroxyacid dehydratase as a crucial target in Escherichia coli
Daniel R. Hyduke et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2007)
Gene regulatory network models for plant development
Elena R. Alvarez-Buylla et al.
CURRENT OPINION IN PLANT BIOLOGY (2007)
Transcriptome network component analysis with limited microarray data
Simon J. Galbraith et al.
BIOINFORMATICS (2006)
Using a state-space model with hidden variables to infer transcription factor activities
Z Li et al.
BIOINFORMATICS (2006)
AGRIS and AtRegNet. A platform to link cis-regulatory elements and transcription factors into regulatory networks
SK Palaniswamy et al.
PLANT PHYSIOLOGY (2006)
A global regulatory role of gluconeogenic genes in Escherichia coli revealed by transcriptome network analysis
KC Kao et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2005)
The Botany Array Resource: e-Northerns, Expression Angling, and Promoter analyses
K Toufighi et al.
PLANT JOURNAL (2005)
Single-gene disorders: What role could moonlighting enzymes play?
G Sriram et al.
AMERICAN JOURNAL OF HUMAN GENETICS (2005)
Transcriptional regulation by the numbers: models
L Bintu et al.
CURRENT OPINION IN GENETICS & DEVELOPMENT (2005)
Genomic identification of direct target genes of LEAFY
DA William et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2004)
Transcriptome-based determination of multiple transcription regulator activities in Escherichia coli by using network component analysis
KC Kao et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2004)
Structure and evolution of transcriptional regulatory networks
MM Babu et al.
CURRENT OPINION IN STRUCTURAL BIOLOGY (2004)
Network component analysis: Reconstruction of regulatory signals in biological systems
JC Liao et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2003)
REDUCE:: an online tool for inferring cis-regulatory elements and transcriptional module activities from microarray data
C Roven et al.
NUCLEIC ACIDS RESEARCH (2003)
Genetic network modeling
EP van Someren et al.
PHARMACOGENOMICS (2002)
Modeling and simulation of genetic regulatory systems: A literature review
H De Jong
JOURNAL OF COMPUTATIONAL BIOLOGY (2002)
Thermodynamic database for protein-nucleic acid interactions (ProNIT)
P Prabakaran et al.
BIOINFORMATICS (2001)
Development of floral organ identity: stories from the MADS house
G Theissen
CURRENT OPINION IN PLANT BIOLOGY (2001)
A genomic perspective on plant transcription factors
JL Riechmann et al.
CURRENT OPINION IN PLANT BIOLOGY (2000)