4.7 Article

BS-Seeker2: a versatile aligning pipeline for bisulfite sequencing data

Related references

Note: Only part of the references are listed.
Article Biochemical Research Methods

BRAT-BW: efficient and accurate mapping of bisulfite-treated reads

Elena Y. Harris et al.

BIOINFORMATICS (2012)

Article Biochemical Research Methods

Fast gapped-read alignment with Bowtie 2

Ben Langmead et al.

NATURE METHODS (2012)

Article Biochemical Research Methods

Bismark: a flexible aligner and methylation caller for Bisulfite-Seq applications

Felix Krueger et al.

BIOINFORMATICS (2011)

Article Biochemical Research Methods

MethylCoder: software pipeline for bisulfite-treated sequences

Brent Pedersen et al.

BIOINFORMATICS (2011)

Article Biochemistry & Molecular Biology

Sperm Methylation Profiles Reveal Features of Epigenetic Inheritance and Evolution in Primates

Antoine Molaro et al.

Article Biochemical Research Methods

Fast and SNP-tolerant detection of complex variants and splicing in short reads

Thomas D. Wu et al.

BIOINFORMATICS (2010)

Article Biochemical Research Methods

Updates to the RMAP short-read mapping software

Andrew D. Smith et al.

BIOINFORMATICS (2009)

Article Multidisciplinary Sciences

Human DNA methylomes at base resolution show widespread epigenomic differences

Ryan Lister et al.

NATURE (2009)

Article Biotechnology & Applied Microbiology

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

Ben Langmead et al.

GENOME BIOLOGY (2009)

Article Biochemical Research Methods

SOAP: short oligonucleotide alignment program

Ruiqiang Li et al.

BIOINFORMATICS (2008)

Article Biochemistry & Molecular Biology

Galaxy: A platform for interactive large-scale genome analysis

B Giardine et al.

GENOME RESEARCH (2005)