4.7 Article

NetWalker: a contextual network analysis tool for functional genomics

Related references

Note: Only part of the references are listed.
Article Biochemical Research Methods

Cytoscape 2.8: new features for data integration and network visualization

Michael E. Smoot et al.

BIOINFORMATICS (2011)

Article Biochemical Research Methods

BiGG: a Biochemical Genetic and Genomic knowledgebase of large scale metabolic reconstructions

Jan Schellenberger et al.

BMC BIOINFORMATICS (2010)

Article Biochemical Research Methods

GAGE: generally applicable gene set enrichment for pathway analysis

Weijun Luo et al.

BMC BIOINFORMATICS (2009)

Article Biochemical Research Methods

Analysis of Gene Sets Based on the Underlying Regulatory Network

Ali Shojaie et al.

JOURNAL OF COMPUTATIONAL BIOLOGY (2009)

Article Biochemical Research Methods

Integrated network analysis platform for protein-protein interactions

Jianmin Wu et al.

NATURE METHODS (2009)

Article Biochemical Research Methods

Network visualization and analysis of gene expression data using BioLayout Express(3D)

Athanasios Theocharidis et al.

NATURE PROTOCOLS (2009)

Article Genetics & Heredity

Integrative molecular concept modeling of prostate cancer progression

Scott A. Tomlins et al.

NATURE GENETICS (2007)

Article Multidisciplinary Sciences

Gene set enrichment analysis: A knowledge-based approach for interpreting genome-wide expression profiles

A Subramanian et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2005)

Article Multidisciplinary Sciences

A network-based analysis of systemic inflammation in humans

SE Calvano et al.

NATURE (2005)

Review Pharmacology & Pharmacy

Biological networks and analysis of experimental data in drug discovery

Y Nikolsky et al.

DRUG DISCOVERY TODAY (2005)

Article Biotechnology & Applied Microbiology

Osprey: a network visualization system

BJ Breitkreutz et al.

GENOME BIOLOGY (2003)

Article Biochemistry & Molecular Biology

BIND - The Biomolecular Interaction Network Database

GD Bader et al.

NUCLEIC ACIDS RESEARCH (2001)

Article Biochemistry & Molecular Biology

KEGG: Kyoto Encyclopedia of Genes and Genomes

M Kanehisa et al.

NUCLEIC ACIDS RESEARCH (2000)