4.7 Article

Short read Illumina data for the de novo assembly of a non-model snail species transcriptome (Radix balthica, Basommatophora, Pulmonata), and a comparison of assembler performance

Related references

Note: Only part of the references are listed.
Article Biotechnology & Applied Microbiology

Transcriptome sequencing in an ecologically important tree species: assembly, annotation, and marker discovery

Thomas L. Parchman et al.

BMC GENOMICS (2010)

Article Biotechnology & Applied Microbiology

Comparing de novo assemblers for 454 transcriptome data

Sujai Kumar et al.

BMC GENOMICS (2010)

Article Biochemistry & Molecular Biology

The complete mitochondrial genome of Radix balthica (Pulmonata, Basommatophora), obtained by low coverage shot gun next generation sequencing

B. Feldmeyer et al.

MOLECULAR PHYLOGENETICS AND EVOLUTION (2010)

Article Biotechnology & Applied Microbiology

Gene discovery using massively parallel pyrosequencing to develop ESTs for the flesh fly Sarcophaga crassipalpis

Daniel A. Hahn et al.

BMC GENOMICS (2009)

Article Biotechnology & Applied Microbiology

Comprehensive EST analysis of the symbiotic sea anemone, Anemonia viridis

Cecile Sabourault et al.

BMC GENOMICS (2009)

Article Biotechnology & Applied Microbiology

Characterization of the Zoarces viviparus liver transcriptome using massively parallel pyrosequencing

Erik Kristiansson et al.

BMC GENOMICS (2009)

Article Biotechnology & Applied Microbiology

Transcriptome analysis of the central nervous system of the mollusc Lymnaea stagnalis

Z-P Feng et al.

BMC GENOMICS (2009)

Article Biochemistry & Molecular Biology

Construction of an adult barnacle (Balanus amphitrite) cDNA library and selection of reference genes for quantitative RT-PCR studies

Tristano Bacchetti De Gregoris et al.

BMC MOLECULAR BIOLOGY (2009)

Article Biochemistry & Molecular Biology

Benchmarking Next-Generation Transcriptome Sequencing for Functional and Evolutionary Genomics

John G. Gibbons et al.

MOLECULAR BIOLOGY AND EVOLUTION (2009)

Article Biochemistry & Molecular Biology

Velvet: Algorithms for de novo short read assembly using de Bruijn graphs

Daniel R. Zerbino et al.

GENOME RESEARCH (2008)

Article Biotechnology & Applied Microbiology

Characterizing the mouse ES cell transcriptome with Illumina sequencing

Ruben Rosenkranz et al.

GENOMICS (2008)

Article Biochemistry & Molecular Biology

Rapid transcriptome characterization for a nonmodel organism using 454 pyrosequencing

J. Cristobal Vera et al.

MOLECULAR ECOLOGY (2008)

Article Multidisciplinary Sciences

Broad phylogenomic sampling improves resolution of the animal tree of life

Casey W. Dunn et al.

NATURE (2008)

Article Multidisciplinary Sciences

The transcriptional landscape of the yeast genome defined by RNA sequencing

Ugrappa Nagalakshmi et al.

SCIENCE (2008)

Review Biochemistry & Molecular Biology

Molecular ecology of global change

Thorsten B. H. Reusch et al.

MOLECULAR ECOLOGY (2007)

Article Biotechnology & Applied Microbiology

Generation and analysis of expressed sequence tags from the ciliate protozoan parasite Ichthyophthirius multifiliis

Jason W. Abernathy et al.

BMC GENOMICS (2007)

Review Biochemistry & Molecular Biology

The molecular ecologist's guide to expressed sequence tags

Amy Bouck et al.

MOLECULAR ECOLOGY (2007)

Article Biochemistry & Molecular Biology

Gene discovery and annotation using LCM-454 transcriptome sequencing

Scott J. Emrich et al.

GENOME RESEARCH (2007)

Article Multidisciplinary Sciences

Animal evolution and the molecular signature of radiations compressed in time

A Rokas et al.

SCIENCE (2005)

Article Biochemistry & Molecular Biology

Simple cDNA normalization using kamchatka crab duplex-specific nuclease

PA Zhulidov et al.

NUCLEIC ACIDS RESEARCH (2004)