4.7 Article

EuroPineDB: a high-coverage web database for maritime pine transcriptome

Related references

Note: Only part of the references are listed.
Article Biochemical Research Methods

AlignMiner: a Web-based tool for detection of divergent regions in multiple sequence alignments of conserved sequences

Dario Guerrero et al.

ALGORITHMS FOR MOLECULAR BIOLOGY (2010)

Article Biochemistry & Molecular Biology

Identification of genes regulated by ammonium availability in the roots of maritime pine trees

Javier Canales et al.

AMINO ACIDS (2010)

Article Biochemical Research Methods

SeqTrim: a high-throughput pipeline for pre-processing any type of sequence read

Juan Falgueras et al.

BMC BIOINFORMATICS (2010)

Article Biotechnology & Applied Microbiology

Transcriptome sequencing in an ecologically important tree species: assembly, annotation, and marker discovery

Thomas L. Parchman et al.

BMC GENOMICS (2010)

Article Biochemical Research Methods

PineSAP-sequence alignment and SNP identification pipeline

Jill L. Wegrzyn et al.

BIOINFORMATICS (2009)

Article Biochemical Research Methods

BLAST plus : architecture and applications

Christiam Camacho et al.

BMC BIOINFORMATICS (2009)

Article Biotechnology & Applied Microbiology

Sequencing and de novo analysis of a coral larval transcriptome using 454 GSFlx

Eli Meyer et al.

BMC GENOMICS (2009)

Article Plant Sciences

A new genomic resource dedicated to wood formation in Eucalyptus

David Rengel et al.

BMC PLANT BIOLOGY (2009)

Review Genetics & Heredity

RNA-Seq: a revolutionary tool for transcriptomics

Zhong Wang et al.

NATURE REVIEWS GENETICS (2009)

Review Biotechnology & Applied Microbiology

Identifying protein-coding genes in genomic sequences

Jennifer Harrow et al.

GENOME BIOLOGY (2009)

Article Genetics & Heredity

Next-Generation DNA Sequencing Methods

Elaine R. Mardis

Annual Review of Genomics and Human Genetics (2008)

Article Biochemistry & Molecular Biology

High-throughput functional annotation and data mining with the Blast2GO suite

Stefan Gotz et al.

NUCLEIC ACIDS RESEARCH (2008)

Article Multidisciplinary Sciences

Distinguishing protein-coding and noncoding genes in the human genome

Michele Clamp et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2007)

Article Biotechnology & Applied Microbiology

MELOGEN:: an EST database for melon functional genomics

Daniel Gonzalez-Ibeas et al.

BMC GENOMICS (2007)

Article Biochemical Research Methods

The proteome of maritime pine wood forming tissue

JM Gion et al.

PROTEOMICS (2005)

Article Biochemistry & Molecular Biology

mreps: efficient and flexible detection of tandem repeats in DNA

R Kolpakov et al.

NUCLEIC ACIDS RESEARCH (2003)

Article Multidisciplinary Sciences

Apparent homology of expressed genes from wood-forming tissues of loblolly pine (Pinus taeda L.) with Arabidopsis thaliana

M Kirst et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2003)

Article Biochemistry & Molecular Biology

STACK: Sequence Tag Alignment and Consensus Knowledgebase

A Christoffels et al.

NUCLEIC ACIDS RESEARCH (2001)

Article Biochemistry & Molecular Biology

The InterPro database, an integrated documentation resource for protein families, domains and functional sites

R Apweiler et al.

NUCLEIC ACIDS RESEARCH (2001)

Article Biochemistry & Molecular Biology

An optimized protocol for analysis of EST sequences

F Liang et al.

NUCLEIC ACIDS RESEARCH (2000)