Related references
Note: Only part of the references are listed.Instability in progressive multiple sequence alignment algorithms
Kieran Boyce et al.
ALGORITHMS FOR MOLECULAR BIOLOGY (2015)
Simple chained guide trees give poorer multiple sequence alignments than inferred trees in simulation and phylogenetic benchmarks
Ge Tan et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2015)
Simple chained guide trees give high-quality protein multiple sequence alignments
Kieran Boyce et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2014)
MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability
Kazutaka Katoh et al.
MOLECULAR BIOLOGY AND EVOLUTION (2013)
Graph-based modeling of tandem repeats improves global multiple sequence alignment
Adam M. Szalkowski et al.
NUCLEIC ACIDS RESEARCH (2013)
Evolutionary inference via the Poisson Indel Process
Alexandre Bouchard-Cote et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2013)
Fast and robust multiple sequence alignment with phylogeny-aware gap placement
Adam M. Szalkowski
BMC BIOINFORMATICS (2012)
Nature, Position, and Frequency of Mutations Made in a Single Cycle of HIV-1 Replication
Michael E. Abram et al.
JOURNAL OF VIROLOGY (2010)
New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0
Stephane Guindon et al.
SYSTEMATIC BIOLOGY (2010)
Alignment uncertainty and genomic analysis
Karen M. Wong et al.
SCIENCE (2008)
Phylogeny-aware gap placement prevents errors in sequence alignment and evolutionary analysis
Ari Loytynoja et al.
SCIENCE (2008)
An algorithm for progressive multiple alignment of sequences with insertions
A Löytynoja et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2005)
MUSCLE: a multiple sequence alignment method with reduced time and space complexity
RC Edgar
BMC BIOINFORMATICS (2004)
Evolutionary HMMs: a Bayesian approach to multiple alignment
I Holmes et al.
BIOINFORMATICS (2001)
The complexity of multiple sequence alignment with SP-score that is a metric
P Bonizzoni et al.
THEORETICAL COMPUTER SCIENCE (2001)
Computational complexity of multiple sequence alignment with SP-Score
W Just
JOURNAL OF COMPUTATIONAL BIOLOGY (2001)
T-Coffee: A novel method for fast and accurate multiple sequence alignment
C Notredame et al.
JOURNAL OF MOLECULAR BIOLOGY (2000)
Share Paper
