4.6 Article

Detecting temporal protein complexes from dynamic protein-protein interaction networks

Related references

Note: Only part of the references are listed.
Article Biochemical Research Methods

Inference of dynamic networks using time-course data

Yongsoo Kim et al.

BRIEFINGS IN BIOINFORMATICS (2014)

Article Biochemistry & Molecular Biology

The BioGRID interaction database: 2013 update

Andrew Chatr-aryamontri et al.

NUCLEIC ACIDS RESEARCH (2013)

Article Biochemical Research Methods

Multifunctional proteins revealed by overlapping clustering in protein interaction network

Emmanuelle Becker et al.

BIOINFORMATICS (2012)

Article Biochemical Research Methods

Genome-scale analysis of interaction dynamics reveals organization of biological networks

Jishnu Das et al.

BIOINFORMATICS (2012)

Article Biochemical Research Methods

How networks change with time

Yongjin Park et al.

BIOINFORMATICS (2012)

Article Mathematical & Computational Biology

Integrating external biological knowledge in the construction of regulatory networks from time-series expression data

Kenneth Lo et al.

BMC SYSTEMS BIOLOGY (2012)

Article Biochemical Research Methods

Detecting overlapping protein complexes in protein-protein interaction networks

Tamas Nepusz et al.

NATURE METHODS (2012)

Article Biochemical Research Methods

MINE: Module Identification in Networks

Kahn Rhrissorrakrai et al.

BMC BIOINFORMATICS (2011)

Article Biochemical Research Methods

SPICi: a fast clustering algorithm for large biological networks

Peng Jiang et al.

BIOINFORMATICS (2010)

Review Biochemical Research Methods

Toward the dynamic interactome: it's about time

Teresa M. Przytycka et al.

BRIEFINGS IN BIOINFORMATICS (2010)

Article Biochemical Research Methods

A core-attachment based method to detect protein complexes in PPI networks

Min Wu et al.

BMC BIOINFORMATICS (2009)

Article Biochemistry & Molecular Biology

Up-to-date catalogues of yeast protein complexes

Shuye Pu et al.

NUCLEIC ACIDS RESEARCH (2009)

Article Multidisciplinary Sciences

Recovering time-varying networks of dependencies in social and biological studies

Amr Ahmed et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2009)

Article Multidisciplinary Sciences

High-quality binary protein interaction map of the yeast interactome network

Haiyuan Yu et al.

SCIENCE (2008)

Article Biochemical Research Methods

Semantic integration to identify overlapping functional modules in protein interaction networks

Young-Rae Cho et al.

BMC BIOINFORMATICS (2007)

Article Biotechnology & Applied Microbiology

A human phenome-interactome network of protein complexes implicated in genetic disorders

Kasper Lage et al.

NATURE BIOTECHNOLOGY (2007)

Article Biochemical Research Methods

Development and implementation of an algorithm for detection of protein complexes in large interaction networks

Md Altaf-Ul-Amin et al.

BMC BIOINFORMATICS (2006)

Article Multidisciplinary Sciences

Proteome survey reveals modularity of the yeast cell machinery

AC Gavin et al.

NATURE (2006)

Article Multidisciplinary Sciences

Global landscape of protein complexes in the yeast Saccharomyces cerevisiae

NJ Krogan et al.

NATURE (2006)

Article Multidisciplinary Sciences

Protein complexes and functional modules in molecular networks

V Spirin et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2003)

Review Biochemistry & Molecular Biology

Diversity of protein-protein interactions

IMA Nooren et al.

EMBO JOURNAL (2003)

Article Biochemical Research Methods

An automated method for finding molecular complexes in large protein interaction networks

GD Bader et al.

BMC BIOINFORMATICS (2003)

Article Biochemistry & Molecular Biology

An efficient algorithm for large-scale detection of protein families

AJ Enright et al.

NUCLEIC ACIDS RESEARCH (2002)

Article Biochemistry & Molecular Biology

Gene Expression Omnibus: NCBI gene expression and hybridization array data repository

R Edgar et al.

NUCLEIC ACIDS RESEARCH (2002)