4.6 Article Proceedings Paper

Optimizing de novo transcriptome assembly from short-read RNA-Seq data: a comparative study

Related references

Note: Only part of the references are listed.
Article Multidisciplinary Sciences

Recurrent chimeric RNAs enriched in human prostate cancer identified by deep sequencing

Kalpana Kannan et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2011)

Article Multidisciplinary Sciences

Comparative Functional Genomics of the Fission Yeasts

Nicholas Rhind et al.

SCIENCE (2011)

Article Biotechnology & Applied Microbiology

De novo characterization of a whitefly transcriptome and analysis of its gene expression during development

Xiao-Wei Wang et al.

BMC GENOMICS (2010)

Article Biochemistry & Molecular Biology

Optimization of de novo transcriptome assembly from next-generation sequencing data

Yann Surget-Groba et al.

GENOME RESEARCH (2010)

Article Genetics & Heredity

The developmental dynamics of the maize leaf transcriptome

Pinghua Li et al.

NATURE GENETICS (2010)

Article Biochemical Research Methods

De novo assembly and analysis of RNA-seq data

Gordon Robertson et al.

NATURE METHODS (2010)

Article Biochemical Research Methods

De novo transcriptome assembly with ABySS

Inanc Birol et al.

BIOINFORMATICS (2009)

Article Biochemical Research Methods

TopHat: discovering splice junctions with RNA-Seq

Cole Trapnell et al.

BIOINFORMATICS (2009)

Article Biochemical Research Methods

SOAP2: an improved ultrafast tool for short read alignment

Ruiqiang Li et al.

BIOINFORMATICS (2009)

Article Multidisciplinary Sciences

Transcriptome sequencing to detect gene fusions in cancer

Christopher A. Maher et al.

NATURE (2009)

Article Biotechnology & Applied Microbiology

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

Ben Langmead et al.

GENOME BIOLOGY (2009)

Article Biochemistry & Molecular Biology

Velvet: Algorithms for de novo short read assembly using de Bruijn graphs

Daniel R. Zerbino et al.

GENOME RESEARCH (2008)