4.6 Article

MotifMap: integrative genome-wide maps of regulatory motif sites for model species

Related references

Note: Only part of the references are listed.
Article Biochemistry & Molecular Biology

Diverse gene reprogramming events occur in the same spatial clusters of distal regulatory elements

Ofir Hakim et al.

GENOME RESEARCH (2011)

Article Biochemistry & Molecular Biology

Detection of nonneutral substitution rates on mammalian phylogenies

Katherine S. Pollard et al.

GENOME RESEARCH (2010)

Article Biochemical Research Methods

MotifMap: a human genome-wide map of candidate regulatory motif sites

Xiaohui Xie et al.

BIOINFORMATICS (2009)

Article Biochemistry & Molecular Biology

PH Domain-Only Protein PHLDA3 Is a p53-Regulated Repressor of Akt

Tatsuya Kawase et al.

Review Biochemistry & Molecular Biology

Next-generation DNA sequencing of paired-end tags (PET) for transcriptome and genome analyses

Melissa J. Fullwood et al.

GENOME RESEARCH (2009)

Article Multidisciplinary Sciences

Comprehensive Mapping of Long-Range Interactions Reveals Folding Principles of the Human Genome

Erez Lieberman-Aiden et al.

SCIENCE (2009)

Review Multidisciplinary Sciences

Discovery of functional elements in 12 Drosophila genomes using evolutionary signatures

Alexander Stark et al.

NATURE (2007)

Article Multidisciplinary Sciences

Genome-wide mapping of in vivo protein-DNA interactions

David S. Johnson et al.

SCIENCE (2007)

Article Biochemistry & Molecular Biology

Finding cis-regulatory elements using comparative genomics:: Some lessons from ENCODE data

David C. King et al.

GENOME RESEARCH (2007)

Article Biochemistry & Molecular Biology

Analysis of the vertebrate insulator protein CTCF-binding sites in the human genome

Tae Hoon Kim et al.

Article Biochemistry & Molecular Biology

A global map of p53 transcription-factor binding sites in the human genome

CL Wei et al.

Review Genetics & Heredity

Functional polymorphisms in dopamine and serotonin pathway genes

UM D'Souza et al.

HUMAN MUTATION (2006)

Article Biochemistry & Molecular Biology

Evolutionarily conserved elements in vertebrate, insect, worm, and yeast genomes

A Siepel et al.

GENOME RESEARCH (2005)

Article Biotechnology & Applied Microbiology

The discovery, positioning and verification of a set of transcription-associated motifs in vertebrates

L Ettwiller et al.

GENOME BIOLOGY (2005)

Article Biochemistry & Molecular Biology

Aligning multiple genomic sequences with the threaded blockset aligner

M Blanchette et al.

GENOME RESEARCH (2004)

Review Genetics & Heredity

Micrornas: Small RNAs with a big role in gene regulation

L He et al.

NATURE REVIEWS GENETICS (2004)

Article Multidisciplinary Sciences

The International HapMap Project

RA Gibbs et al.

NATURE (2003)

Article Biochemistry & Molecular Biology

TRANSFAC (R): transcriptional regulation, from patterns to profiles

V Matys et al.

NUCLEIC ACIDS RESEARCH (2003)

Article Biochemistry & Molecular Biology

Transcription Regulatory Regions Database (TRRD): its status in 2002

NA Kolchanov et al.

NUCLEIC ACIDS RESEARCH (2002)

Article Biochemistry & Molecular Biology

Wnt signals are targets and mediators of Gli function

JL Mullor et al.

CURRENT BIOLOGY (2001)

Article Biochemistry & Molecular Biology

dbSNP: the NCBI database of genetic variation

ST Sherry et al.

NUCLEIC ACIDS RESEARCH (2001)

Article Biochemistry & Molecular Biology

KEGG: Kyoto Encyclopedia of Genes and Genomes

M Kanehisa et al.

NUCLEIC ACIDS RESEARCH (2000)