Related references
Note: Only part of the references are listed.Biological wheat straw valorization: Multicriteria optimization of Polyporus brumalis pretreatment in packed bed bioreactor
Simeng Zhou et al.
MICROBIOLOGYOPEN (2018)
Multiplicity of enzymatic functions in the CAZy AA3 family
Leander Suetzl et al.
APPLIED MICROBIOLOGY AND BIOTECHNOLOGY (2018)
A revised family-level classification of the Polyporales (Basidiomycota)
Alfredo Justo et al.
FUNGAL BIOLOGY (2017)
The integrative omics of white-rot fungus Pycnoporus coccineus reveals co-regulated CAZymes for orchestrated lignocellulose breakdown
Shingo Miyauchi et al.
PLOS ONE (2017)
Activities of Secreted Aryl Alcohol Quinone Oxidoreductases from Pycnoporus cinnabarinus Provide Insights into Fungal Degradation of Plant Biomass
Yann Mathieu et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2016)
Comparative analysis of the secretomes of Schizophyllum commune and other wood-decay basidiomycetes during solid-state fermentation reveals its unique lignocellulose-degrading enzyme system
Ning Zhu et al.
BIOTECHNOLOGY FOR BIOFUELS (2016)
Time-scale dynamics of proteome and transcriptome of the white-rot fungus Phlebia radiata: growth on spruce wood and decay effect on lignocellulose
Jaana Kuuskeri et al.
BIOTECHNOLOGY FOR BIOFUELS (2016)
Comparative and transcriptional analysis of the predicted secretome in the lignocellulose-degrading basidiomycete fungus Pleurotus ostreatus
Manuel Alfaro et al.
ENVIRONMENTAL MICROBIOLOGY (2016)
Interactive tree of life (iTOL) v3: an online tool for the display and annotation of phylogenetic and other trees
Ivica Letunic et al.
NUCLEIC ACIDS RESEARCH (2016)
Extracellular electron transfer systems fuel cellulose oxidative degradation
Daniel Kracher et al.
SCIENCE (2016)
Visual Comparative Omics of Fungi for Plant Biomass Deconstruction
Shingo Miyauchi et al.
FRONTIERS IN MICROBIOLOGY (2016)
Single-domain flavoenzymes trigger lytic polysaccharide monooxygenases for oxidative degradation of cellulose
Sona Garajova et al.
SCIENTIFIC REPORTS (2016)
Independent evolution of four heme peroxidase superfamilies
Marcel Zamocky et al.
ARCHIVES OF BIOCHEMISTRY AND BIOPHYSICS (2015)
Solid-state anaerobic digestion of fungal pretreated Miscanthus sinensis harvested in two different seasons
Juliana Vasco-Correa et al.
BIORESOURCE TECHNOLOGY (2015)
Enhanced degradation of softwood versus hardwood by the white-rot fungus Pycnoporus coccineus
Marie Couturier et al.
BIOTECHNOLOGY FOR BIOFUELS (2015)
A PCR-based method to quantify fungal growth during pretreatment of lignocellulosic biomass
Zhou Simeng et al.
JOURNAL OF MICROBIOLOGICAL METHODS (2015)
A survey of genes encoding H2O2-producing GMC oxidoreductases in 10 Polyporales genomes
Patricia Ferreira et al.
MYCOLOGIA (2015)
Solid-state fermentation in multi-well plates to assess pretreatment efficiency of rot fungi on lignocellulose biomass
Simeng Zhou et al.
MICROBIAL BIOTECHNOLOGY (2015)
Genome-Wide Annotation and Comparative Analysis of Cytochrome P450 Monooxygenases in Basidiomycete Biotrophic Plant Pathogens
Lehlohonolo Benedict Qhanya et al.
PLOS ONE (2015)
Temporal Alterations in the Secretome of the Selective Ligninolytic Fungus Ceriporiopsis subvermispora during Growth on Aspen Wood Reveal This Organism's Strategy for Degrading Lignocellulose
Chiaki Hori et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2014)
A novel glucose dehydrogenase from the white-rot fungus Pycnoporus cinnabarinus: production in Aspergillus niger and physicochemical characterization of the recombinant enzyme
Francois Piumi et al.
APPLIED MICROBIOLOGY AND BIOTECHNOLOGY (2014)
RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies
Alexandros Stamatakis
BIOINFORMATICS (2014)
Variation in the chemical composition of wheat straw: the role of tissue ratio and composition
Samuel R. A. Collins et al.
BIOTECHNOLOGY FOR BIOFUELS (2014)
Fast solubilization of recalcitrant cellulosic biomass by the basidiomycete fungus Laetisaria arvalis involves successive secretion of oxidative and hydrolytic enzymes
David Navarro et al.
BIOTECHNOLOGY FOR BIOFUELS (2014)
The genome of the white-rot fungus Pycnoporus cinnabarinus: a basidiomycete model with a versatile arsenal for lignocellulosic biomass breakdown
Anthony Levasseur et al.
BMC GENOMICS (2014)
An alcohol oxidase of Phanerochaete chrysosporium with a distinct glycerol oxidase activity
Diana Linke et al.
ENZYME AND MICROBIAL TECHNOLOGY (2014)
Genomics of wood-degrading fungi
Robin A. Ohm et al.
FUNGAL GENETICS AND BIOLOGY (2014)
The carbohydrate-active enzymes database (CAZy) in 2013
Vincent Lombard et al.
NUCLEIC ACIDS RESEARCH (2014)
MycoCosm portal: gearing up for 1000 fungal genomes
Igor V. Grigoriev et al.
NUCLEIC ACIDS RESEARCH (2014)
Systematic Identification and Evolutionary Analysis of Catalytically Versatile Cytochrome P450 Monooxygenase Families Enriched in Model Basidiomycete Fungi
Khajamohiddin Syed et al.
PLOS ONE (2014)
Cytochrome P450 Monooxygenase CYP53 Family in Fungi: Comparative Structural and Evolutionary Analysis and Its Role as a Common Alternative Anti-Fungal Drug Target
Poojah Jawallapersand et al.
PLOS ONE (2014)
Extensive sampling of basidiomycete genomes demonstrates inadequacy of the white-rot/brown-rot paradigm for wood decay fungi
Robert Riley et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2014)
Structural implications of the C-terminal tail in the catalytic and stability properties of manganese peroxidases from ligninolytic fungi
Elena Fernandez-Fueyo et al.
ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY (2014)
Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2
Michael I. Love et al.
GENOME BIOLOGY (2014)
Fungal pretreatment of switchgrass for improved saccharification and simultaneous enzyme production
Jiayang Liu et al.
BIORESOURCE TECHNOLOGY (2013)
Expansion of the enzymatic repertoire of the CAZy database to integrate auxiliary redox enzymes
Anthony Levasseur et al.
BIOTECHNOLOGY FOR BIOFUELS (2013)
Estimating Gene Gain and Loss Rates in the Presence of Error in Genome Assembly and Annotation Using CAFE 3
Mira V. Han et al.
MOLECULAR BIOLOGY AND EVOLUTION (2013)
Genomewide analysis of polysaccharides degrading enzymes in 11 white- and brown-rot Polyporales provides insight into mechanisms of wood decay
Chiaki Hori et al.
MYCOLOGIA (2013)
Phylogenetic and phylogenomic overview of the Polyporales
Manfred Binder et al.
MYCOLOGIA (2013)
Lignin-degrading peroxidases in Polyporales: an evolutionary survey based on 10 sequenced genomes
Francisco J. Ruiz-Duenas et al.
MYCOLOGIA (2013)
Transcriptional and Enzymatic Profiling of Pleurotus ostreatus Laccase Genes in Submerged and Solid-State Fermentation Cultures
Raul Castanera et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2012)
Fungal pretreatment of cornstalk with Phanerochaete chrysosporium for enhancing enzymatic saccharification and hydrogen production
Lei Zhao et al.
BIORESOURCE TECHNOLOGY (2012)
Fungal pretreatment of lignocellulosic biomass
Caixia Wan et al.
BIOTECHNOLOGY ADVANCES (2012)
Systematic and searchable classification of cytochrome P450 proteins encoded by fungal and oomycete genomes
Venkatesh Moktali et al.
BMC GENOMICS (2012)
Insight into trade-off between wood decay and parasitism from the genome of a fungal forest pathogen
Ake Olson et al.
NEW PHYTOLOGIST (2012)
Comparative genomics of Ceriporiopsis subvermispora and Phanerochaete chrysosporium provide insight into selective ligninolysis
Elena Fernandez-Fueyo et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2012)
The Paleozoic Origin of Enzymatic Lignin Decomposition Reconstructed from 31 Fungal Genomes
Dimitrios Floudas et al.
SCIENCE (2012)
Cytochrome P450 enzymes in the fungal kingdom
B. Cresnar et al.
BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS (2011)
HMMER web server: interactive sequence similarity searching
Robert D. Finn et al.
NUCLEIC ACIDS RESEARCH (2011)
High-quality draft assemblies of mammalian genomes from massively parallel sequence data
Sante Gnerre et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2011)
Rnnotator: an automated de novo transcriptome assembly pipeline from stranded RNA-Seq reads
Jeffrey Martin et al.
BMC GENOMICS (2010)
New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0
Stephane Guindon et al.
SYSTEMATIC BIOLOGY (2010)
Effect of microbial pretreatment on enzymatic hydrolysis and fermentation of cotton stalks for ethanol production
Jian Shi et al.
BIOMASS & BIOENERGY (2009)
Substrate oxidation sites in versatile peroxidase and other basidiomycete peroxidases
Francisco J. Ruiz-Duenas et al.
JOURNAL OF EXPERIMENTAL BOTANY (2009)
Protein structure homology modeling using SWISS-MODEL workspace
Lorenza Bordoli et al.
NATURE PROTOCOLS (2009)
Improvement of phylogenies after removing divergent and ambiguously aligned blocks from protein sequence alignments
Gerard Talavera et al.
SYSTEMATIC BIOLOGY (2007)
M-Coffee: combining multiple sequence alignment methods with T-Coffee
IM Wallace et al.
NUCLEIC ACIDS RESEARCH (2006)
Highly efficient production of laccase by the basidiomycete Pycnoporus cinnabarinus
AMCR Alves et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2004)
A combined transmembrane topology and signal peptide prediction method
L Käll et al.
JOURNAL OF MOLECULAR BIOLOGY (2004)
The COG database: an updated version includes eukaryotes
RL Tatusov et al.
BMC BIOINFORMATICS (2003)
OrthoMCL: Identification of ortholog groups for eukaryotic genomes
L Li et al.
GENOME RESEARCH (2003)
MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform
K Katoh et al.
NUCLEIC ACIDS RESEARCH (2002)
A general empirical model of protein evolution derived from multiple protein families using a maximum-likelihood approach
S Whelan et al.
MOLECULAR BIOLOGY AND EVOLUTION (2001)
Predicting subcellular localization of proteins based on their N-terminal amino acid sequence
O Emanuelsson et al.
JOURNAL OF MOLECULAR BIOLOGY (2000)
Screening of heterozygous DNA markers in shiitake (Lentinula edodes) using de-dikaryotization via preparation of protoplasts and isolation of four meiotic monokaryons from one basidium
K Miyazaki et al.
JOURNAL OF WOOD SCIENCE (2000)
Share Paper
