Related references
Note: Only part of the references are listed.Perspective: Insight into reaction coordinates and dynamics from the potential energy landscape
D. J. Wales
JOURNAL OF CHEMICAL PHYSICS (2015)
Direct observation of hierarchical protein dynamics
Jozef R. Lewandowski et al.
SCIENCE (2015)
Coarse-Grained Langevin Equation for Protein Dynamics: Global Anisotropy and a Mode Approach to Local Complexity
J. Copperman et al.
JOURNAL OF PHYSICAL CHEMISTRY B (2015)
CABS-flex predictions of protein flexibility compared with NMR ensembles
Michal Jamroz et al.
BIOINFORMATICS (2014)
XSEDE: Accelerating Scientific Discovery
John Towns et al.
COMPUTING IN SCIENCE & ENGINEERING (2014)
Improved Cross Validation of a Static Ubiquitin Structure Derived from High Precision Residual Dipolar Couplings Measured in a Drug-Based Liquid Crystalline Phase
Alexander S. Maltsev et al.
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2014)
Concerted Dihedral Rotations Give Rise to Internal Friction in Unfolded Proteins
Ignacia Echeverria et al.
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2014)
The relationship of dynamical heterogeneity to the Adam-Gibbs and random first-order transition theories of glass formation
Francis W. Starr et al.
JOURNAL OF CHEMICAL PHYSICS (2013)
Determination of structural fluctuations of proteins from structure-based calculations of residual dipolar couplings
Rinaldo W. Montalvao et al.
JOURNAL OF BIOMOLECULAR NMR (2012)
Weak Long-Range Correlated Motions in a Surface Patch of Ubiquitin Involved in Molecular Recognition
R. Bryn Fenwick et al.
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2011)
Proteins as fractals: Role of the hydrodynamic interaction
Rony Granek
PHYSICAL REVIEW E (2011)
Improved side-chain torsion potentials for the Amber ff99SB protein force field
Kresten Lindorff-Larsen et al.
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2010)
Use of Relaxation Enhancements in a Paramagnetic Environment for the Structure Determination of Proteins Using NMR Spectroscopy
Tobias Madl et al.
ANGEWANDTE CHEMIE-INTERNATIONAL EDITION (2009)
The emerging complexity of protein ubiquitination
David Komander
BIOCHEMICAL SOCIETY TRANSACTIONS (2009)
Principal Component Analysis for Protein Folding Dynamics
Gia G. Maisuradze et al.
JOURNAL OF MOLECULAR BIOLOGY (2009)
Protein elastic network models and the ranges of cooperativity
Lei Yang et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2009)
GROMACS 4: Algorithms for highly efficient, load-balanced, and scalable molecular simulation
Berk Hess et al.
JOURNAL OF CHEMICAL THEORY AND COMPUTATION (2008)
Evaluating rotational diffusion from protein MD simulations
Vance Wong et al.
JOURNAL OF PHYSICAL CHEMISTRY B (2008)
Measuring internal friction of an ultrafast-folding protein
Troy Cellmer et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2008)
Structure and dynamics of de novo proteins from a designed superfamily of 4-helix bundles
Abigail Go et al.
PROTEIN SCIENCE (2008)
Recognition dynamics up to microseconds revealed from an RDC-derived ubiquitin ensemble in solution
Oliver F. Lange et al.
SCIENCE (2008)
Theoretical models for bridging timescales in polymer dynamics
M. G. Guenza
JOURNAL OF PHYSICS-CONDENSED MATTER (2008)
A theory of protein dynamics to predict NMR relaxation
Esther Caballero-Manrique et al.
BIOPHYSICAL JOURNAL (2007)
Structural insights into the interaction of insulin-like growth factor 2 with IGF2R domain 11
Christopher Williams et al.
STRUCTURE (2007)
How well can we understand large-scale protein motions using normal modes of elastic network models?
Lei Yang et al.
BIOPHYSICAL JOURNAL (2007)
Exploring experimental sources of multiple protein conformations in structure-based drug design
Kelly L. Damm et al.
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2007)
The MUMO (minimal under-restraining minimal over-restraining) method for the determination of native state ensembles of proteins
Barbara Richter et al.
JOURNAL OF BIOMOLECULAR NMR (2007)
Canonical sampling through velocity rescaling
Giovanni Bussi et al.
JOURNAL OF CHEMICAL PHYSICS (2007)
GROMACS: Fast, flexible, and free
D Van der Spoel et al.
JOURNAL OF COMPUTATIONAL CHEMISTRY (2005)
Predicting internal protein dynamics from structures using coupled networks of hindered rotators
D Abergel et al.
JOURNAL OF CHEMICAL PHYSICS (2005)
Simultaneous determination of protein structure and dynamics
K Lindorff-Larsen et al.
NATURE (2005)
A limiting speed for protein folding at low solvent viscosity
LL Qiu et al.
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2004)
Fractional Brownian dynamics in proteins
GR Kneller et al.
JOURNAL OF CHEMICAL PHYSICS (2004)
Solution structure of the mature HIV-1 protease monomer - Insight into the tertiary fold and stability of a precursor
R Ishima et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2003)
NMR structure of the forkhead-associated domain from the Arabidopsis receptor kinase-associated protein phosphatase
GI Lee et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2003)
Two homologous rat cellular retinol-binding proteins differ in local conformational flexibility
JY Lu et al.
JOURNAL OF MOLECULAR BIOLOGY (2003)
The precision of NMR structure ensembles revisited
CAEM Spronk et al.
JOURNAL OF BIOMOLECULAR NMR (2003)
Letter to the Editor:: 1H, 13C and 15N resonance assignments of the kinase-interacting FHA domain of Arabidopsis thaliana kinase-associated protein phosphatase
GI Lee et al.
JOURNAL OF BIOMOLECULAR NMR (2003)
Biological water at the protein surface: Dynamical solvation probed directly with femtosecond resolution
SK Pal et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2002)
Folded monomer of HIV-1 protease
R Ishima et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2001)
Reorientational eigenmode dynamics:: A combined MD/NMR relaxation analysis method for flexible parts in globular proteins
JJ Prompers et al.
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2001)
Validation of protein structure from preparations of encapsulated proteins dissolved in low viscosity fluids
CR Babu et al.
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2001)
Anisotropy of fluctuation dynamics of proteins with an elastic network model
AR Atilgan et al.
BIOPHYSICAL JOURNAL (2001)
GROMACS 3.0: a package for molecular simulation and trajectory analysis
E Lindahl et al.
JOURNAL OF MOLECULAR MODELING (2001)
Time scales and pathways for kinetic energy relaxation in solvated proteins: Application to carbonmonoxy myoglobin
DE Sagnella et al.
JOURNAL OF CHEMICAL PHYSICS (2000)
Inelastic neutron scattering from damped collective vibrations of macromolecules
GR Kneller
CHEMICAL PHYSICS (2000)
Harmonicity in slow protein dynamics
K Hinsen et al.
CHEMICAL PHYSICS (2000)
Tissue inhibitor of metalloproteinases-1 undergoes microsecond to millisecond motions at sites of matrix metalloproteinase-induced fit
G Gao et al.
JOURNAL OF MOLECULAR BIOLOGY (2000)
Collective protein dynamics in relation to function
HJC Berendsen et al.
CURRENT OPINION IN STRUCTURAL BIOLOGY (2000)
Calculation of hydrodynamic properties of globular proteins from their atomic-level structure
JG de la Torre et al.
BIOPHYSICAL JOURNAL (2000)