4.5 Article

Goodness-of-Fit Diagnostics for Bayesian Hierarchical Models

Journal

BIOMETRICS
Volume 68, Issue 1, Pages 156-164

Publisher

WILEY-BLACKWELL
DOI: 10.1111/j.1541-0420.2011.01668.x

Keywords

Discrepancy measures; Markov chain Monte Carlo; Model checking; Model criticism; Model hierarchy; Posterior-predictive density

Funding

  1. NIH [R01 CA154591, R01 CA158113]

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This article proposes methodology for assessing goodness of fit in Bayesian hierarchical models. The methodology is based on comparing values of pivotal discrepancy measures (PDMs), computed using parameter values drawn from the posterior distribution, to known reference distributions. Because the resulting diagnostics can be calculated from standard output of Markov chain Monte Carlo algorithms, their computational costs are minimal. Several simulation studies are provided, each of which suggests that diagnostics based on PDMs have higher statistical power than comparable posterior-predictive diagnostic checks in detecting model departures. The proposed methodology is illustrated in a clinical application; an application to discrete data is described in supplementary material.

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