Related references
Note: Only part of the references are listed.Bidirectional best hit r-window gene clusters
Melvin Zhang et al.
BMC BIOINFORMATICS (2010)
Identification and Genomic Analysis of Transcription Factors in Archaeal Genomes Exemplifies Their Functional Architecture and Evolutionary Origin
Ernesto Perez-Rueda et al.
MOLECULAR BIOLOGY AND EVOLUTION (2010)
eggNOG v2.0: extending the evolutionary genealogy of genes with enhanced non-supervised orthologous groups, species and functional annotations
J. Muller et al.
NUCLEIC ACIDS RESEARCH (2010)
Genomic repertoires of DNA-binding transcription factors across the tree of life
Varodom Charoensawan et al.
NUCLEIC ACIDS RESEARCH (2010)
Purification and enzymatic properties of arsenic resistance protein ArsH from heterogeneous expression in E. coli BL21
Wu Xue-ling et al.
TRANSACTIONS OF NONFERROUS METALS SOCIETY OF CHINA (2010)
Evolution of prokaryotic two-component systems: insights from comparative genomics
David E. Whitworth et al.
AMINO ACIDS (2009)
Transcriptional and Functional Studies of Acidithiobacillus ferrooxidans Genes Related to Survival in the Presence of Copper
Claudio A. Navarro et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2009)
EDGAR: A software framework for the comparative analysis of prokaryotic genomes
Jochen Blom et al.
BMC BIOINFORMATICS (2009)
Reliable transfer of transcriptional gene regulatory networks between taxonomically related organisms
Jan Baumbach et al.
BMC SYSTEMS BIOLOGY (2009)
Integrated analysis and reconstruction of microbial transcriptional gene regulatory networks using CoryneRegNet
Jan Baumbach et al.
NATURE PROTOCOLS (2009)
Genetic makeup of the Corynebacterium glutamicum LexA regulon deduced from comparative transcriptomics and in vitro DNA band shift assays
Nina Jochmann et al.
MICROBIOLOGY-SGM (2009)
The chemolithoautotroph Acidithiobacillus ferrooxidans can survive under phosphate-limiting conditions by expressing a C-P lyase operon that allows it to grow on phosphonates
Mario Vera et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2008)
AHL-driven quorum-sensing circuits: their frequency and function among the Proteobacteria
Rebecca J. Case et al.
ISME JOURNAL (2008)
Evolution of metal(loid) binding sites in transcriptional regulators
Efren Ordonez et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2008)
Molecular insights into quorum sensing in Acidithiobacillus ferrooxidans bacteria via molecular modelling of the transcriptional regulator AfeR and of the binding mode of long-chain acyl homoserine lactones
Laurent Soulere et al.
JOURNAL OF MOLECULAR MODELING (2008)
Redox-active antibiotics control gene expression and community behavior in divergent bacteria
Lars E. P. Dietrich et al.
SCIENCE (2008)
Convergent evolution of a new arsenic binding site in the ArsR/SmtB family of metalloregulators
Jie Qin et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2007)
Mycobacterial cells have dual nickel-cobalt sensors - Sequence relationships and metal sites of metal-responsive repressors are not congruent
Duncan R. Campbell et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2007)
NMR structural analysis of cadmium sensing by winged helix repressor CmtR
Lucia Banci et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2007)
Orthologous transcription factors in bacteria have different functions and regulate different genes
Morgan N. Price et al.
PLOS COMPUTATIONAL BIOLOGY (2007)
Bioinformatic prediction and experimental verification of Fur-regulated genes in the extreme acidophile Acidithiobacillus ferrooxidans
Raquel Quatrini et al.
NUCLEIC ACIDS RESEARCH (2007)
Strain-resolved community proteomics reveals recombining genomes of acidophilic bacteria
Ian Lo et al.
NATURE (2007)
The microbiology of biomining: development and optimization of mineral-oxidizing microbial consortia
Douglas E. Rawlings et al.
MICROBIOLOGY-SGM (2007)
The dimeric repressor SoxR binds cooperatively to the promoter(s) regulating expression of the sulfur oxidation (sox) operon of Pseudaminobacter salicylatoxidans KCT001
Sukhendu Mandal et al.
MICROBIOLOGY-SGM (2007)
Molecular modeling and characterization of Vibrio cholerae transcription regulator HlyU
Rudra P. Saha et al.
BMC STRUCTURAL BIOLOGY (2006)
Proteomic and bioinformatic analysis of iron- and sulfur-oxidizing Acidithiobacillus ferrooxidans using immobilized pH gradients and mass spectrometry
Pavel Bouchal et al.
PROTEOMICS (2006)
Improving the accuracy of protein secondary structure prediction using structural alignment
Scott Montgomerie et al.
BMC BIOINFORMATICS (2006)
Identification and analysis of DNA-binding transcription factors in Bacillus subtilis and other Firmicutes -: a genomic approach
Samadhi Moreno-Campuzano et al.
BMC GENOMICS (2006)
Comparative genomics of regulation of heavy metal resistance in Eubacteria
E. A. Permina et al.
BMC MICROBIOLOGY (2006)
Genomics, metagenomics and proteomics in biomining microorganisms
L Valenzuela et al.
BIOTECHNOLOGY ADVANCES (2006)
CoryneRegNet: An ontology-based data warehouse of corynebacterial transcription factors and regulatory networks
J Baumbach et al.
BMC GENOMICS (2006)
Bacterial regulatory networks are extremely flexible in evolution
Irma Lozada-Chavez et al.
NUCLEIC ACIDS RESEARCH (2006)
Isolation, sequence analysis, and comparison of two plasmids (28 and 29 kilobases) from the biomining bacterium Leptospirillum ferrooxidans ATCC 49879
NJ Coram et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2005)
Genome-wide survey of transcription factors in prokaryotes reveals many bacteria-specific families not found in Archaea
Yoshiaki Minezaki et al.
DNA RESEARCH (2005)
Analysis of genes involved in arsenic resistance in Corynebacterium glutamicum ATCC 13032
E Ordóñez et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2005)
Structural determinants of metal selectivity in prokaryotic metal-responsive transcriptional regulators
MA Pennella et al.
BIOMETALS (2005)
A design for life: Prokaryotic metal-binding MerR family regulators
JL Hobman et al.
BIOMETALS (2005)
Structural and functional characterization of Mycobacterium tuberculosis CmtR, a PbII/CdII-sensing SmtB/ArsR metalloregulatory repressor
Y Wang et al.
BIOCHEMISTRY (2005)
The individual and common repertoire of DNA-binding transcriptional regulators of Corynebacterium glutamicum, Corynebacterium efficiens, Corynebacterium diphtheriae and Corynebacterium jeikeium deduced from the complete genome sequences -: art. no. 86
I Brune et al.
BMC GENOMICS (2005)
The ferric iron uptake regulator (Fur) from the extreme acidophile Acidithiobacillus ferrooxidans
R Quatrini et al.
MICROBIOLOGY-SGM (2005)
AbrB-like transcription factors assume a swapped hairpin fold that is evolutionarily related to double-psi β barrels
M Coles et al.
STRUCTURE (2005)
The many faces of the helix-turn-helix domain: Transcription regulation and beyond
L Aravind et al.
FEMS MICROBIOLOGY REVIEWS (2005)
TRACTOR_DB: a database of regulatory networks in gamma-proteobacterial genomes
AD Gonzalez et al.
NUCLEIC ACIDS RESEARCH (2005)
Evolutionary history of quorum-sensing systems in bacteria
E Lerat et al.
MOLECULAR BIOLOGY AND EVOLUTION (2004)
Identification of AbrB-regulated genes involved in biofilm formation by Bacillus subtilis
MA Hamon et al.
MOLECULAR MICROBIOLOGY (2004)
Differential protein expression during growth of Acidithiobacillus ferrooxidans on ferrous iron, sulfur compounds, or metal sulfides
P Ramírez et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2004)
Phylogenetic distribution of DNA-binding transcription factors in bacteria and archaea
E Pérez-Rueda et al.
COMPUTATIONAL BIOLOGY AND CHEMISTRY (2004)
WebLogo: A sequence logo generator
GE Crooks et al.
GENOME RESEARCH (2004)
Characterization of the MerD protein from Ralstonia metallidurans CH34:: a possible role in bacterial mercury resistance by switching off the induction of the mer operon
L Champier et al.
MOLECULAR MICROBIOLOGY (2004)
A DNA element recognised by the molybdenum-responsive transcription factor ModE is conserved in Proteobacteria, green sulphur bacteria and Archaea
DJ Studholme et al.
BMC MICROBIOLOGY (2003)
Molecular basis of metal-ion selectivity and zeptomolar sensitivity by CueR
A Changela et al.
SCIENCE (2003)
Characterisation of CadR from Pseudomonas aeruginosa:: a Cd(II)-responsive MerR homologue
KR Brocklehurst et al.
BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS (2003)
Growth in sulfidic mineral environments: metal resistance mechanisms in acidophilic micro-organisms
M Dopson et al.
MICROBIOLOGY-SGM (2003)
The MerR family of transcriptional regulators
NL Brown et al.
FEMS MICROBIOLOGY REVIEWS (2003)
The SmtB/ArsR family of metalloregulatory transcriptional repressors: structural insights into prokaryotic metal resistance
LS Busenlehner et al.
FEMS MICROBIOLOGY REVIEWS (2003)
HutC/FarR-like bacterial transcription factors of the GntR family contain a small molecule-binding domain of the chorismate lyase fold
L Aravind et al.
FEMS MICROBIOLOGY LETTERS (2003)
GenDB -: an open source genome annotation system for prokaryote genomes
F Meyer et al.
NUCLEIC ACIDS RESEARCH (2003)
The Lrp family of transcriptional regulators
AB Brinkman et al.
MOLECULAR MICROBIOLOGY (2003)
Enumeration and characterization of acidophilic microorganisms isolated from a pilot plant stirred-tank bioleaching operation
N Okibe et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2003)
Role of mobile DNA in the evolution of vancomycin-resistant Enterococcus faecalis
IT Paulsen et al.
SCIENCE (2003)
Domain architectures of σ54-dependent transcriptional activators
DJ Studholme et al.
JOURNAL OF BACTERIOLOGY (2003)
Bioleaching review part A: Progress in bioleaching: fundamentals and mechanisms of bacterial metal sulfide oxidation
T Rohwerder et al.
APPLIED MICROBIOLOGY AND BIOTECHNOLOGY (2003)
The quorum sensing negative regulators EsaR and ExpR(Ecc), homologues within the LuxR family, retain the ability to function as activators of transcription
SB von Bodman et al.
JOURNAL OF BACTERIOLOGY (2003)
The divergent chromosomal ars operon of Acidithiobacillus ferrooxidans is regulated by an atypical ArsR protein
BG Butcher et al.
MICROBIOLOGY-SGM (2002)
Subdivision of the helix-turn-helix GntR family of bacterial regulators in the FadR, HutC, MocR, and YtrA subfamilies
S Rigali et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2002)
The evolution of bacterial LuxI and LuxR quorum sensing regulators
KM Gray et al.
MICROBIOLOGY-SGM (2001)
Quorum sensing in bacteria
MB Miller et al.
ANNUAL REVIEW OF MICROBIOLOGY (2001)
The quality of merC, a module of the mer mosaic
CA Liebert et al.
JOURNAL OF MOLECULAR EVOLUTION (2000)
Complete genome sequence of Pseudomonas aeruginosa PAO1, an opportunistic pathogen
CK Stover et al.
NATURE (2000)
The repertoire of DNA-binding transcriptional regulators in Escherichia coli K-12
Ernesto Perez-Rueda et al.
NUCLEIC ACIDS RESEARCH (2000)
The chromosomal arsenic resistance genes of Thiobacillus ferrooxidans have an unusual arrangement and confer increased arsenic and antimony resistance to Escherichia coli
BG Butcher et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2000)