4.3 Article

Genome wide identification of Acidithiobacillus ferrooxidans (ATCC 23270) transcription factors and comparative analysis of ArsR and MerR metal regulators

Related references

Note: Only part of the references are listed.
Article Biochemical Research Methods

Bidirectional best hit r-window gene clusters

Melvin Zhang et al.

BMC BIOINFORMATICS (2010)

Article Biochemistry & Molecular Biology

Genomic repertoires of DNA-binding transcription factors across the tree of life

Varodom Charoensawan et al.

NUCLEIC ACIDS RESEARCH (2010)

Article Metallurgy & Metallurgical Engineering

Purification and enzymatic properties of arsenic resistance protein ArsH from heterogeneous expression in E. coli BL21

Wu Xue-ling et al.

TRANSACTIONS OF NONFERROUS METALS SOCIETY OF CHINA (2010)

Review Biochemistry & Molecular Biology

Evolution of prokaryotic two-component systems: insights from comparative genomics

David E. Whitworth et al.

AMINO ACIDS (2009)

Article Biotechnology & Applied Microbiology

Transcriptional and Functional Studies of Acidithiobacillus ferrooxidans Genes Related to Survival in the Presence of Copper

Claudio A. Navarro et al.

APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2009)

Article Biochemical Research Methods

EDGAR: A software framework for the comparative analysis of prokaryotic genomes

Jochen Blom et al.

BMC BIOINFORMATICS (2009)

Article Mathematical & Computational Biology

Reliable transfer of transcriptional gene regulatory networks between taxonomically related organisms

Jan Baumbach et al.

BMC SYSTEMS BIOLOGY (2009)

Article Biochemistry & Molecular Biology

Evolution of metal(loid) binding sites in transcriptional regulators

Efren Ordonez et al.

JOURNAL OF BIOLOGICAL CHEMISTRY (2008)

Article Multidisciplinary Sciences

Redox-active antibiotics control gene expression and community behavior in divergent bacteria

Lars E. P. Dietrich et al.

SCIENCE (2008)

Article Biochemistry & Molecular Biology

Convergent evolution of a new arsenic binding site in the ArsR/SmtB family of metalloregulators

Jie Qin et al.

JOURNAL OF BIOLOGICAL CHEMISTRY (2007)

Article Biochemistry & Molecular Biology

Mycobacterial cells have dual nickel-cobalt sensors - Sequence relationships and metal sites of metal-responsive repressors are not congruent

Duncan R. Campbell et al.

JOURNAL OF BIOLOGICAL CHEMISTRY (2007)

Article Biochemistry & Molecular Biology

NMR structural analysis of cadmium sensing by winged helix repressor CmtR

Lucia Banci et al.

JOURNAL OF BIOLOGICAL CHEMISTRY (2007)

Article Biochemical Research Methods

Orthologous transcription factors in bacteria have different functions and regulate different genes

Morgan N. Price et al.

PLOS COMPUTATIONAL BIOLOGY (2007)

Article Biophysics

Molecular modeling and characterization of Vibrio cholerae transcription regulator HlyU

Rudra P. Saha et al.

BMC STRUCTURAL BIOLOGY (2006)

Article Biochemical Research Methods

Improving the accuracy of protein secondary structure prediction using structural alignment

Scott Montgomerie et al.

BMC BIOINFORMATICS (2006)

Article Biotechnology & Applied Microbiology

Identification and analysis of DNA-binding transcription factors in Bacillus subtilis and other Firmicutes -: a genomic approach

Samadhi Moreno-Campuzano et al.

BMC GENOMICS (2006)

Article Microbiology

Comparative genomics of regulation of heavy metal resistance in Eubacteria

E. A. Permina et al.

BMC MICROBIOLOGY (2006)

Review Biotechnology & Applied Microbiology

Genomics, metagenomics and proteomics in biomining microorganisms

L Valenzuela et al.

BIOTECHNOLOGY ADVANCES (2006)

Article Biochemistry & Molecular Biology

Bacterial regulatory networks are extremely flexible in evolution

Irma Lozada-Chavez et al.

NUCLEIC ACIDS RESEARCH (2006)

Article Biotechnology & Applied Microbiology

Analysis of genes involved in arsenic resistance in Corynebacterium glutamicum ATCC 13032

E Ordóñez et al.

APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2005)

Article Biochemistry & Molecular Biology

A design for life: Prokaryotic metal-binding MerR family regulators

JL Hobman et al.

BIOMETALS (2005)

Review Microbiology

The many faces of the helix-turn-helix domain: Transcription regulation and beyond

L Aravind et al.

FEMS MICROBIOLOGY REVIEWS (2005)

Article Biochemistry & Molecular Biology

TRACTOR_DB: a database of regulatory networks in gamma-proteobacterial genomes

AD Gonzalez et al.

NUCLEIC ACIDS RESEARCH (2005)

Article Biochemistry & Molecular Biology

Evolutionary history of quorum-sensing systems in bacteria

E Lerat et al.

MOLECULAR BIOLOGY AND EVOLUTION (2004)

Article Biochemistry & Molecular Biology

Identification of AbrB-regulated genes involved in biofilm formation by Bacillus subtilis

MA Hamon et al.

MOLECULAR MICROBIOLOGY (2004)

Article Biotechnology & Applied Microbiology

Differential protein expression during growth of Acidithiobacillus ferrooxidans on ferrous iron, sulfur compounds, or metal sulfides

P Ramírez et al.

APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2004)

Article Biology

Phylogenetic distribution of DNA-binding transcription factors in bacteria and archaea

E Pérez-Rueda et al.

COMPUTATIONAL BIOLOGY AND CHEMISTRY (2004)

Article Biochemistry & Molecular Biology

WebLogo: A sequence logo generator

GE Crooks et al.

GENOME RESEARCH (2004)

Article Multidisciplinary Sciences

Molecular basis of metal-ion selectivity and zeptomolar sensitivity by CueR

A Changela et al.

SCIENCE (2003)

Article Biochemistry & Molecular Biology

Characterisation of CadR from Pseudomonas aeruginosa:: a Cd(II)-responsive MerR homologue

KR Brocklehurst et al.

BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS (2003)

Review Microbiology

The MerR family of transcriptional regulators

NL Brown et al.

FEMS MICROBIOLOGY REVIEWS (2003)

Article Biochemistry & Molecular Biology

GenDB -: an open source genome annotation system for prokaryote genomes

F Meyer et al.

NUCLEIC ACIDS RESEARCH (2003)

Review Biochemistry & Molecular Biology

The Lrp family of transcriptional regulators

AB Brinkman et al.

MOLECULAR MICROBIOLOGY (2003)

Article Biotechnology & Applied Microbiology

Enumeration and characterization of acidophilic microorganisms isolated from a pilot plant stirred-tank bioleaching operation

N Okibe et al.

APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2003)

Article Multidisciplinary Sciences

Role of mobile DNA in the evolution of vancomycin-resistant Enterococcus faecalis

IT Paulsen et al.

SCIENCE (2003)

Review Microbiology

Domain architectures of σ54-dependent transcriptional activators

DJ Studholme et al.

JOURNAL OF BACTERIOLOGY (2003)

Review Biotechnology & Applied Microbiology

Bioleaching review part A: Progress in bioleaching: fundamentals and mechanisms of bacterial metal sulfide oxidation

T Rohwerder et al.

APPLIED MICROBIOLOGY AND BIOTECHNOLOGY (2003)

Article Biochemistry & Molecular Biology

Subdivision of the helix-turn-helix GntR family of bacterial regulators in the FadR, HutC, MocR, and YtrA subfamilies

S Rigali et al.

JOURNAL OF BIOLOGICAL CHEMISTRY (2002)

Article Microbiology

The evolution of bacterial LuxI and LuxR quorum sensing regulators

KM Gray et al.

MICROBIOLOGY-SGM (2001)

Review Microbiology

Quorum sensing in bacteria

MB Miller et al.

ANNUAL REVIEW OF MICROBIOLOGY (2001)

Article Biochemistry & Molecular Biology

The quality of merC, a module of the mer mosaic

CA Liebert et al.

JOURNAL OF MOLECULAR EVOLUTION (2000)

Article Biochemistry & Molecular Biology

The repertoire of DNA-binding transcriptional regulators in Escherichia coli K-12

Ernesto Perez-Rueda et al.

NUCLEIC ACIDS RESEARCH (2000)