Journal
JOURNAL OF BIOMOLECULAR NMR
Volume 17, Issue 4, Pages 283-294Publisher
KLUWER ACADEMIC PUBL
DOI: 10.1023/A:1008362931964
Keywords
bioinformatics; dipolar couplings; postgenomic research; protein data base; structure elucidation; three dimensional homology search
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A program, DipoCoup, is presented that allows to search the protein data bank for proteins which have a three dimensional fold that is at least partially homologous to a protein under investigation. The three dimensional homology search uses secondary structure alignment based on chemical shifts and dipolar couplings or pseudocontact shifts for the three dimensional orientation of secondary structure elements. Moreover, the program offers additional tools for handling and analyzing dipolar couplings.
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