Related references
Note: Only part of the references are listed.CUSHAW: a CUDA compatible short read aligner to large genomes based on the Burrows-Wheeler transform
Yongchao Liu et al.
BIOINFORMATICS (2012)
SOAP3: ultra-fast GPU-based parallel alignment tool for short reads
Chi-Man Liu et al.
BIOINFORMATICS (2012)
High-performance short sequence alignment with GPU acceleration
Mian Lu et al.
DISTRIBUTED AND PARALLEL DATABASES (2012)
GPU-BLAST: using graphics processors to accelerate protein sequence alignment
Panagiotis D. Vouzis et al.
BIOINFORMATICS (2011)
GPU computing for systems biology
Lorenzo Dematte et al.
BRIEFINGS IN BIOINFORMATICS (2010)
PLAST: parallel local alignment search tool for database comparison
Van Hoa Nguyen et al.
BMC BIOINFORMATICS (2009)
BLAST plus : architecture and applications
Christiam Camacho et al.
BMC BIOINFORMATICS (2009)
Database indexing for production MegaBLAST searches
Aleksandr Morgulis et al.
BIOINFORMATICS (2008)
CUDA compatible GPU cards as efficient hardware accelerators for Smith-Waterman sequence alignment
Svetlin A. Manavski et al.
BMC BIOINFORMATICS (2008)
GPU computing
John D. Owens et al.
PROCEEDINGS OF THE IEEE (2008)
A general reconfigurable architecture for the BLAST algorithm
Euripides Sotiriades et al.
JOURNAL OF VLSI SIGNAL PROCESSING SYSTEMS FOR SIGNAL IMAGE AND VIDEO TECHNOLOGY (2007)
A fast and symmetric DUST implementation to mask low-complexity DNA sequences
Aleksandr Morgulis et al.
JOURNAL OF COMPUTATIONAL BIOLOGY (2006)
WindowMasker:: window-based masker for sequenced genomes
A Morgulis et al.
BIOINFORMATICS (2006)
A greedy algorithm for aligning DNA sequences
Z Zhang et al.
JOURNAL OF COMPUTATIONAL BIOLOGY (2000)