Journal
BIOINFORMATICS
Volume 31, Issue 1, Pages 114-115Publisher
OXFORD UNIV PRESS
DOI: 10.1093/bioinformatics/btu590
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Funding
- National Environmental Research Council (NERC) [R8/H10/56]
- Medical Research Council (MRC) [MR/K001744/1]
- Biotechnology and Biological Sciences Research Council (BBSRC) [BB/J004243/1]
- Biotechnology and Biological Sciences Research Council [BB/M020037/1, BBS/E/D/20211551, BBS/E/D/20310000] Funding Source: researchfish
- Medical Research Council [MR/K001744/1] Funding Source: researchfish
- Natural Environment Research Council [NBAF010003] Funding Source: researchfish
- BBSRC [BB/M020037/1, BBS/E/D/20211551, BBS/E/D/20310000] Funding Source: UKRI
- MRC [MR/K001744/1] Funding Source: UKRI
- NERC [NBAF010003] Funding Source: UKRI
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Motivation: The Oxford Nanopore MinION device represents a unique sequencing technology. As a mobile sequencing device powered by the USB port of a laptop, the MinION has huge potential applications. To enable these applications, the bioinformatics community will need to design and build a suite of tools specifically for MinION data. Results: Here we present poRe, a package for R that enables users to manipulate, organize, summarize and visualize MinION nanopore sequencing data. As a package for R, poRe has been tested on Windows, Linux and MacOSX. Crucially, the Windows version allows users to analyse MinION data on the Windows laptop attached to the device.
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