4.7 Article

opm: an R package for analysing OmniLog® phenotype microarray data

Journal

BIOINFORMATICS
Volume 29, Issue 14, Pages 1823-1824

Publisher

OXFORD UNIV PRESS
DOI: 10.1093/bioinformatics/btt291

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Funding

  1. Deutsche Forschungsgemeinschaft [SFB/TRR 51, SI 1352/1-2]
  2. European Commission [222886]

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opm is an R package designed to analyse multidimensional OmniLog (R) phenotype microarray ( PM) data. opm provides management, visualization and statistical analysis of PM data, including curve-parameter estimation and discretization, dedicated and customizable plots, metadata management, automated generation of textual and tabular reports, mapping of substrates to databases, batch conversion of files and export to phylogenetic software in the YAML markup language.

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