4.7 Article

Explicet: graphical user interface software for metadata-driven management, analysis and visualization of microbiome data

Journal

BIOINFORMATICS
Volume 29, Issue 23, Pages 3100-3101

Publisher

OXFORD UNIV PRESS
DOI: 10.1093/bioinformatics/btt526

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Funding

  1. National Institutes of Health [HG005964]
  2. Alfred P. Sloan Foundation (Microbiology of the Built Environment)

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Studies of the human microbiome, and microbial community ecology in general, have blossomed of late and are now a burgeoning source of exciting research findings. Along with the advent of next-generation sequencing platforms, which have dramatically increased the scope of microbiome-related projects, several high-performance sequence analysis pipelines (e. g. QIIME, MOTHUR, VAMPS) are now available to investigators for microbiome analysis. The subject of our manuscript, the graphical user interface-based Explicet software package, fills a previously unmet need for a robust, yet intuitive means of integrating the outputs of the software pipelines with user-specified metadata and then visualizing the combined data.

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