4.7 Article

DockAFM: benchmarking protein structures by docking under AFM topographs

Journal

BIOINFORMATICS
Volume 29, Issue 24, Pages 3230-3231

Publisher

OXFORD UNIV PRESS
DOI: 10.1093/bioinformatics/btt561

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Funding

  1. French ANR [ANR-07-PCVI-0002-01]
  2. Commissariat a l'energie atomique et aux energies alternatives (CEA)
  3. Agence Nationale de la Recherche (ANR) [ANR-07-PCVI-0002] Funding Source: Agence Nationale de la Recherche (ANR)

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Proteins can adopt a variety of conformations. We present a simple server for scoring the agreement between 3D atomic structures and experimental envelopes obtained by atomic force microscopy. Three different structures of immunoglobulins (IgG) or blood coagulation factor V activated were tested and their agreement with several topographical surfaces was computed. This approach can be used to test structural variability within a family of proteins.

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