Journal
BIOINFORMATICS
Volume 28, Issue 20, Pages 2693-2695Publisher
OXFORD UNIV PRESS
DOI: 10.1093/bioinformatics/bts494
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Funding
- RCSB PDB [NSF DBI 0829586]
- Google Summer of Code
- Scottish Universities Life Sciences Alliance (SULSA)
- Div Of Biological Infrastructure
- Direct For Biological Sciences [0829586] Funding Source: National Science Foundation
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Motivation: BioJava is an open-source project for processing of biological data in the Java programming language. We have recently released a new version (3.0.5), which is a major update to the code base that greatly extends its functionality. Results: BioJava now consists of several independent modules that provide state-of-the-art tools for protein structure comparison, pairwise and multiple sequence alignments, working with DNA and protein sequences, analysis of amino acid properties, detection of protein modifications and prediction of disordered regions in proteins as well as parsers for common file formats using a biologically meaningful data model.
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