4.7 Article

Estimation of pairwise sequence similarity of mammalian enhancers with word neighbourhood counts

Related references

Note: Only part of the references are listed.
Article Biochemistry & Molecular Biology

Discriminative prediction of mammalian enhancers from DNA sequence

Dongwon Lee et al.

GENOME RESEARCH (2011)

Article Biochemistry & Molecular Biology

RSAT 2011: regulatory sequence analysis tools

Morgane Thomas-Chollier et al.

NUCLEIC ACIDS RESEARCH (2011)

Article Genetics & Heredity

ChIP-Seq identification of weakly conserved heart enhancers

Matthew J. Blow et al.

NATURE GENETICS (2010)

Article Biochemistry & Molecular Biology

Finding regulatory DNA motifs using alignment-free evolutionary conservation information

Raluca Gordan et al.

NUCLEIC ACIDS RESEARCH (2010)

Article Cell Biology

Motif-Blind, Genome-Wide Discovery of cis-Regulatory Modules in Drosophila and Mouse

Miriam R. Kantorovitz et al.

DEVELOPMENTAL CELL (2009)

Article Biochemical Research Methods

Alignment-Free Sequence Comparison (I): Statistics and Power

Gesine Reinert et al.

JOURNAL OF COMPUTATIONAL BIOLOGY (2009)

Article Multidisciplinary Sciences

Combinatorial binding predicts spatio-temporal cis-regulatory activity

Robert P. Zinzen et al.

NATURE (2009)

Article Multidisciplinary Sciences

ChIP-seq accurately predicts tissue-specific activity of enhancers

Axel Visel et al.

NATURE (2009)

Article Multidisciplinary Sciences

Whole-proteome phylogeny of large dsDNA virus families by an alignment-free method

Guohong Albert Wu et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2009)

Article Genetics & Heredity

Methylation and deamination of CpGs generate p53-binding sites on a genomic scale

Tomasz Zemojtel et al.

TRENDS IN GENETICS (2009)

Article Statistics & Probability

Approximate word matches between two random sequences

Conrad J. Burden et al.

ANNALS OF APPLIED PROBABILITY (2008)

Article Biochemical Research Methods

SeqAn An efficient, generic C++ library for sequence analysis

Andreas Doering et al.

BMC BIOINFORMATICS (2008)

Article Multidisciplinary Sciences

Species-specific transcription in mice carrying human chromosome 21

Michael D. Wilson et al.

SCIENCE (2008)

Article Biochemical Research Methods

A statistical method for alignment-free comparison of regulatory sequences

Miriam R. Kantorovitz et al.

BIOINFORMATICS (2007)

Article Biochemical Research Methods

Asymptotic behaviour and optimal word size for exact and approximate word matches between random sequences

Sylvain Foret et al.

BMC BIOINFORMATICS (2006)

Article Biochemical Research Methods

Metrics for comparing regulatory sequences on the basis of pattern counts

J van Helden

BIOINFORMATICS (2004)

Review Biochemical Research Methods

Alignment-free sequence comparison - a review

S Vinga et al.

BIOINFORMATICS (2003)

Article Multidisciplinary Sciences

Distributional regimes for the number of k-word matches between two random sequences

RA Lippert et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2002)

Article Chemistry, Multidisciplinary

Assessment of the parallelization approach of d2_cluster for high-performance sequence clustering

JE Carpenter et al.

JOURNAL OF COMPUTATIONAL CHEMISTRY (2002)