4.7 Article

ESS++: a C++ objected-oriented algorithm for Bayesian stochastic search model exploration

Journal

BIOINFORMATICS
Volume 27, Issue 4, Pages 587-588

Publisher

OXFORD UNIV PRESS
DOI: 10.1093/bioinformatics/btq684

Keywords

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Funding

  1. Medical Research Council Clinical Sciences Centre
  2. Nouvelle Societe Francaise d'Atherosclerose
  3. EU Community [226756, HEALTH-F4-2010-241504]
  4. PHC ALLIANCE [19419PH]
  5. Wellcome Trust
  6. MRC [G0600609]
  7. Biotechnology and Biological Sciences Research Council [BB/C519670/1] Funding Source: researchfish
  8. Medical Research Council [G0801056B, G0600609, MC_U120097112] Funding Source: researchfish
  9. MRC [MC_U120097112, G0600609] Funding Source: UKRI

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ESS++ is a C++ implementation of a fully Bayesian variable selection approach for single and multiple response linear regression. ESS++ works well both when the number of observations is larger than the number of predictors and in the 'large p, small n' case. In the current version, ESS++ can handle several hundred observations, thousands of predictors and a few responses simultaneously. The core engine of ESS++ for the selection of relevant predictors is based on Evolutionary Monte Carlo. Our implementation is open source, allowing community-based alterations and improvements.

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