4.7 Article

TopiaryExplorer: visualizing large phylogenetic trees with environmental metadata

Journal

BIOINFORMATICS
Volume 27, Issue 21, Pages 3067-3069

Publisher

OXFORD UNIV PRESS
DOI: 10.1093/bioinformatics/btr517

Keywords

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Funding

  1. Bill and Melinda Gates Foundation
  2. National Institutes of Health [DK78669, HG4872 HG4866, 3T15LM009451-03S1]
  3. Howard Hughes Medical Institute

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Motivation: Microbial community profiling is a highly active area of research, but tools that facilitate visualization of phylogenetic trees and associated environmental data have not kept up with the increasing quantity of data generated in these studies. Results: TopiaryExplorer supports the visualization of very large phylogenetic trees, including features such as the automated coloring of branches by environmental data, manipulation of trees and incorporation of per-tip metadata (e.g. taxonomic labels).

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