Related references
Note: Only part of the references are listed.Efficient exploration of discrete energy landscapes
Martin Mann et al.
PHYSICAL REVIEW E (2011)
Computing the Partition Function for Kinetically Trapped RNA Secondary Structures
William A. Lorenz et al.
PLOS ONE (2011)
Quantitative Prediction of miRNA-mRNA Interaction Based on Equilibrium Concentrations
Chikako Ragan et al.
PLOS COMPUTATIONAL BIOLOGY (2011)
Thermodynamics of RNA structures by Wang-Landau sampling
Feng Lou et al.
BIOINFORMATICS (2010)
Predicting Secondary Structural Folding Kinetics for Nucleic Acids
Peinan Zhao et al.
BIOPHYSICAL JOURNAL (2010)
Computing folding pathways between RNA secondary structures
Ivan Dotu et al.
NUCLEIC ACIDS RESEARCH (2010)
ProbKnot: Fast prediction of RNA secondary structure including pseudoknots
Stanislav Bellaousov et al.
RNA (2010)
BarMap: RNA folding on dynamic energy landscapes
Ivo L. Hofacker et al.
RNA (2010)
ASYMPTOTICS OF CANONICAL AND SATURATED RNA SECONDARY STRUCTURES
PETER CLOTE et al.
Journal of Bioinformatics and Computational Biology (2009)
RNA folding: Conformational statistics, folding kinetics, and ion electrostatics
Shi-Jie Chen
ANNUAL REVIEW OF BIOPHYSICS (2008)
Simulating RNA folding kinetics on approximated energy landscapes
Xinyu Tang et al.
JOURNAL OF MOLECULAR BIOLOGY (2008)
Folding kinetics of large RNAs
Michael Geis et al.
JOURNAL OF MOLECULAR BIOLOGY (2008)
Beyond energy minimization: approaches to the kinetic folding of RNA
Christoph Flamm et al.
MONATSHEFTE FUR CHEMIE (2008)
The Vienna RNA Websuite
Andreas R. Gruber et al.
NUCLEIC ACIDS RESEARCH (2008)
miRBase: tools for microRNA genomics
Sam Griffiths-Jones et al.
NUCLEIC ACIDS RESEARCH (2008)
Prediction of RNA secondary structures: from theory to models and real molecules
Peter Schuster
REPORTS ON PROGRESS IN PHYSICS (2006)
Kinefold web server for RNA/DNA folding path and structure prediction including pseudoknots and knots
A Xayaphoummine et al.
NUCLEIC ACIDS RESEARCH (2005)
Using motion planning to study RNA folding kinetics
XY Tang et al.
JOURNAL OF COMPUTATIONAL BIOLOGY (2005)
Efficient computation of RNA folding dynamics
MT Wolfinger et al.
JOURNAL OF PHYSICS A-MATHEMATICAL AND GENERAL (2004)
Riboswitch finder - a tool for identification of riboswitch RNAs
P Bengert et al.
NUCLEIC ACIDS RESEARCH (2004)
Statistical analysis of local search landscapes
CR Reeves et al.
JOURNAL OF THE OPERATIONAL RESEARCH SOCIETY (2004)
Prediction and statistics of pseudoknots in RNA structures using exactly clustered stochastic simulations
A Xayaphoummine et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2003)
Vienna RNA secondary structure server
IL Hofacker
NUCLEIC ACIDS RESEARCH (2003)
Barrier trees of degenerate landscapes
C Flamm et al.
ZEITSCHRIFT FUR PHYSIKALISCHE CHEMIE-INTERNATIONAL JOURNAL OF RESEARCH IN PHYSICAL CHEMISTRY & CHEMICAL PHYSICS (2002)
Determining the density of states for classical statistical models: A random walk algorithm to produce a flat histogram
FG Wang et al.
PHYSICAL REVIEW E (2001)
Efficient, multiple-range random walk algorithm to calculate the density of states
FG Wang et al.
PHYSICAL REVIEW LETTERS (2001)
RNA folding at elementary step resolution
C Flamm et al.
RNA (2000)