4.7 Article

BioGRID REST Service, BiogridPlugin2 and BioGRID WebGraph: new tools for access to interaction data at BioGRID

Journal

BIOINFORMATICS
Volume 27, Issue 7, Pages 1043-1044

Publisher

OXFORD UNIV PRESS
DOI: 10.1093/bioinformatics/btr062

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Funding

  1. Biotechnology and Biological Sciences Research Council of the UK [BB/F010486/1]
  2. National Institutes of Health National Center for Research Resources [1R01RR024031]
  3. European Commission [2007-223411]
  4. BBSRC [BB/F010486/1] Funding Source: UKRI
  5. Biotechnology and Biological Sciences Research Council [BB/F010486/1] Funding Source: researchfish

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The Biological General Repository for Interaction Datasets (BioGRID) representational state transfer (REST) service allows full URL-based access to curated protein and genetic interaction data at the BioGRID database. Appending URL parameters allows filtering of data by various attributes including gene names and identifiers, PubMed ID and evidence type. We also describe two visualization tools that interface with the REST service, the BiogridPlugin2 for Cytoscape and the BioGRID WebGraph.

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