4.7 Article Proceedings Paper

Sorting the nuclear proteome

Related references

Note: Only part of the references are listed.
Article Biochemical Research Methods

Assigning roles to DNA regulatory motifs using comparative genomics

Fabian A. Buske et al.

BIOINFORMATICS (2010)

Article Mathematical & Computational Biology

The proteins of intra-nuclear bodies: a data-driven analysis of sequence, interaction and expression

Nurul Mohamad et al.

BMC SYSTEMS BIOLOGY (2010)

Article Biochemical Research Methods

A Bayesian Network Model of Proteins' Association with Promyelocytic Leukemia (PML) Nuclear Bodies

Mikael Boden et al.

JOURNAL OF COMPUTATIONAL BIOLOGY (2010)

Article Biochemistry & Molecular Biology

ELM: the status of the 2010 eukaryotic linear motif resource

Cathryn M. Gould et al.

NUCLEIC ACIDS RESEARCH (2010)

Article Cell Biology

PML Nuclear Bodies

Valerie Lallemand-Breitenbach et al.

COLD SPRING HARBOR PERSPECTIVES IN BIOLOGY (2010)

Review Biochemistry & Molecular Biology

Stemming out of a new PML era?

P. Salomoni

CELL DEATH AND DIFFERENTIATION (2009)

Review Cell Biology

Nuclear neighborhoods and gene expression

Rui Zhao et al.

CURRENT OPINION IN GENETICS & DEVELOPMENT (2009)

Article Biochemistry & Molecular Biology

Six Classes of Nuclear Localization Signals Specific to Different Binding Grooves of Importin α

Shunichi Kosugi et al.

JOURNAL OF BIOLOGICAL CHEMISTRY (2009)

Article Biochemistry & Molecular Biology

The Perinucleolar Compartment

Callie Pollock et al.

JOURNAL OF CELLULAR BIOCHEMISTRY (2009)

Review Genetics & Heredity

Transcription factories: gene expression in unions?

Heidi Sutherland et al.

NATURE REVIEWS GENETICS (2009)

Article Biochemistry & Molecular Biology

InterPro: the integrative protein signature database

Sarah Hunter et al.

NUCLEIC ACIDS RESEARCH (2009)

Article Multidisciplinary Sciences

Epigenetic inactivation of the Sotos overgrowth syndrome gene histone methyltransferase NSD1 in human neuroblastoma and glioma

Maria Berdasco et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2009)

Review Biochemistry & Molecular Biology

The Cajal body

Glenn E. Morris

BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR CELL RESEARCH (2008)

Article Biochemical Research Methods

Determining nucleolar association from sequence by leveraging protein-protein interactions

Mikael Boden et al.

JOURNAL OF COMPUTATIONAL BIOLOGY (2008)

Article Multidisciplinary Sciences

The deubiquitinylation and localization of PTEN are regulated by a HAUSP-PML network

Min Sup Song et al.

NATURE (2008)

Article Biochemistry & Molecular Biology

Selective activation of NFAT by promyelocytic leukemia protein

Y-H Lo et al.

ONCOGENE (2008)

Review Biochemistry & Molecular Biology

Regulation of apoptosis by PML and the PML-NBs

R. Bernardi et al.

ONCOGENE (2008)

Article Multidisciplinary Sciences

Retinoic acid-stimulated sequential phosphorylation, PML recruitment, and SUMOylation of nuclear receptor TR2 to suppress Oct4 expression

Pawan Gupta et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2008)

Article Biotechnology & Applied Microbiology

Towards defining the nuclear proteome

J. Lynn Fink et al.

GENOME BIOLOGY (2008)

Article Biochemistry & Molecular Biology

DBDtaxonomically broad transcription factor predictions: new content and functionality

Derek Wilson et al.

NUCLEIC ACIDS RESEARCH (2008)

Article Biochemistry & Molecular Biology

The BioGRID interaction database: 2008 update

Bobby-Joe Breitkreutz et al.

NUCLEIC ACIDS RESEARCH (2008)

Review Cell Biology

Nucleolus: the fascinating nuclear body

Valentina Sirri et al.

HISTOCHEMISTRY AND CELL BIOLOGY (2008)

Review Cell Biology

Structure, dynamics and functions of promyelocytic leukaemia nuclear bodies

Rosa Bernardi et al.

NATURE REVIEWS MOLECULAR CELL BIOLOGY (2007)

Article Biochemistry & Molecular Biology

Nuc-PLoc: a new web-server for predicting protein subnuclear localization by fusing PseAA composition and PsePSSM

Hong-Bin Shen et al.

PROTEIN ENGINEERING DESIGN & SELECTION (2007)

Review Cell Biology

The multifunctional nucleolus

Francois-Michel Boisvert et al.

NATURE REVIEWS MOLECULAR CELL BIOLOGY (2007)

Review Biochemistry & Molecular Biology

PML and PML nuclear bodies: Implications in antiviral defence

Roger D. Everett et al.

BIOCHIMIE (2007)

Review Biochemistry & Molecular Biology

Beyond the sequence: Cellular organization of genome function

Tom Misteli

Review Cell Biology

Molecular mechanism of the nuclear protein import cycle

Murray Stewart

NATURE REVIEWS MOLECULAR CELL BIOLOGY (2007)

Article Biochemistry & Molecular Biology

Transcriptional regulation is affected by subnuclear targeting of reporter plasmids to PML nuclear bodies

Gregory J. Block et al.

MOLECULAR AND CELLULAR BIOLOGY (2006)

Article Biochemistry & Molecular Biology

The mechanisms of PML-nuclear body formation

Tian Huai Shen et al.

MOLECULAR CELL (2006)

Article Cell Biology

The road much traveled: trafficking in the cell nucleus

Stanislaw A. Gorski et al.

CURRENT OPINION IN CELL BIOLOGY (2006)

Article Biochemistry & Molecular Biology

NOPdb: nucleolar proteome database

Anthony Kar Lun Leung et al.

NUCLEIC ACIDS RESEARCH (2006)

Article Biochemistry & Molecular Biology

TRANSFAC (R) and its module TRANSCompel (R): transcriptional gene regulation in eukaryotes

V. Matys et al.

NUCLEIC ACIDS RESEARCH (2006)

Article Biochemical Research Methods

An SVM-based system for predicting protein subnuclear localizations

ZD Lei et al.

BMC BIOINFORMATICS (2005)

Article Cell Biology

Systems biology in the cell nucleus

S Gorski et al.

JOURNAL OF CELL SCIENCE (2005)

Article Multidisciplinary Sciences

Global and Hox-specific roles for the MLL1 methyltransferase

MG Guenther et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2005)

Article Multidisciplinary Sciences

Nucleolar proteome dynamics

JS Andersen et al.

NATURE (2005)

Article Multidisciplinary Sciences

A gene atlas of the mouse and human protein-encoding transcriptomes

AI Su et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2004)

Article Oncology

Loss of the tumor suppressor PML in human cancers of multiple histologic origins

C Gurrieri et al.

JNCI-JOURNAL OF THE NATIONAL CANCER INSTITUTE (2004)

Article Biochemistry & Molecular Biology

A genome-wide and nonredundant mouse transcription factor database

M Kanamori et al.

BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS (2004)

Review Biochemistry & Molecular Biology

PML nuclear bodies: dynamic sensors of DNA damage and cellular stress

G Dellaire et al.

BIOESSAYS (2004)

Review Cell Biology

Nuclear speckles: A model for nuclear organelles

AI Lamond et al.

NATURE REVIEWS MOLECULAR CELL BIOLOGY (2003)

Article Biochemistry & Molecular Biology

The Nuclear Protein Database (NPD): sub-nuclear localisation and functional annotation of the nuclear proteome

G Dellaire et al.

NUCLEIC ACIDS RESEARCH (2003)

Review Biochemistry & Molecular Biology

Addressing protein localization within the nucleus

WA Bickmore et al.

EMBO JOURNAL (2002)

Article Biochemistry & Molecular Biology

Directed proteomic analysis of the human nucleolus

JS Andersen et al.

CURRENT BIOLOGY (2002)

Article Biochemistry & Molecular Biology

Directed proteomic analysis of the human nucleolus

JS Andersen et al.

CURRENT BIOLOGY (2002)

Review Biochemistry & Molecular Biology

Role and fate of PML nuclear bodies in response to interferon and viral infections

T Regad et al.

ONCOGENE (2001)

Review Multidisciplinary Sciences

Translating the histone code

T Jenuwein et al.

SCIENCE (2001)