4.7 Article

Analyzing marginal cases in differential shotgun proteomics

Journal

BIOINFORMATICS
Volume 27, Issue 2, Pages 275-276

Publisher

OXFORD UNIV PRESS
DOI: 10.1093/bioinformatics/btq632

Keywords

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Funding

  1. Coordenacao de Aperfeicoamento de Pessoal de Nivel Superior [CAPES-Fiocruz 30/2006]
  2. Programa de Desenvolvimento Tecnologico em Insumos para Saude (PDTIS-Fiocruz)
  3. Conselho Nacional de Desenvolvimento Cientifico e Tecnologico (CNPq)
  4. Fundacao Carlos Chagas Filho de Amparo a Pesquisa do Estado do Rio de Janeiro
  5. National Institutes of Health [NIH 5R01MH067880, P41 RR011823]

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We present an approach to statistically pinpoint differentially expressed proteins that have quantitation values near the quantitation threshold and are not identified in all replicates (marginal cases). Our method uses a Bayesian strategy to combine parametric statistics with an empirical distribution built from the reproducibility quality of the technical replicates.

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