Journal
BIOINFORMATICS
Volume 26, Issue 20, Pages 2631-2632Publisher
OXFORD UNIV PRESS
DOI: 10.1093/bioinformatics/btq455
Keywords
-
Categories
Funding
- US Department of Energy [DE-FG02-02ER63453, DE-FC02-02ER63446]
- National Institute of Allergy and Infectious Diseases [1U54AI084844]
- National Cancer Institute [UH2CA14023]
- Sloan Foundation [2004-5-46EG]
- University of Illinois, Department of Primary Industries, Victoria, Australia
Ask authors/readers for more resources
JCVI Metagenomics Reports (METAREP) is a Web 2.0 application designed to help scientists analyze and compare annotated metagenomics datasets. It utilizes Solr/Lucene, a scalable search engine, to quickly query large data collections. Furthermore, users can use its SQL-like query syntax to filter and refine datasets. METAREP provides graphical summaries for top taxonomic and functional classifications as well as a GO, NCBI Taxonomy and KEGG Pathway Browser. Users can compare absolute and relative counts of multiple datasets at various functional and taxonomic levels. Advanced comparative features comprise statistical tests as well as multidimensional scaling, heatmap and hierarchical clustering plots. Summaries can be exported as tabdelimited files, publication quality plots in PDF format. A data management layer allows collaborative data analysis and result sharing.
Authors
I am an author on this paper
Click your name to claim this paper and add it to your profile.
Reviews
Recommended
No Data Available