4.7 Article

MIReNA: finding microRNAs with high accuracy and no learning at genome scale and from deep sequencing data

Related references

Note: Only part of the references are listed.
Article Biochemical Research Methods

microPred: effective classification of pre-miRNAs for human miRNA gene prediction

Rukshan Batuwita et al.

BIOINFORMATICS (2009)

Article Evolutionary Biology

The deep evolution of metazoan microRNAs

Benjamin M. Wheeler et al.

EVOLUTION & DEVELOPMENT (2009)

Article Biochemistry & Molecular Biology

Gene silencing in the marine diatom Phaeodactylum tricornutum

Valentina De Riso et al.

NUCLEIC ACIDS RESEARCH (2009)

Article Multidisciplinary Sciences

RNAi in Budding Yeast

Ines A. Drinnenberg et al.

SCIENCE (2009)

Article Biochemical Research Methods

MicroRNA prediction with a novel ranking algorithm based on random walks

Yunpen Xu et al.

BIOINFORMATICS (2008)

Article Biotechnology & Applied Microbiology

Discovering microRNAs from deep sequencing data using miRDeep

Marc R. Friedlaender et al.

NATURE BIOTECHNOLOGY (2008)

Article Multidisciplinary Sciences

MicroRNAs and the advent of vertebrate morphological complexity

Alysha M. Heimberg et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2008)

Review Cell Biology

The evolution of animal microRNA function

Ryusuke Niwa et al.

CURRENT OPINION IN GENETICS & DEVELOPMENT (2007)

Article Evolutionary Biology

The phylogenetic distribution of metazoan microRNAs: Insights into evolutionary complexity and constraint

Lorenzo F. Sempere et al.

JOURNAL OF EXPERIMENTAL ZOOLOGY PART B-MOLECULAR AND DEVELOPMENTAL EVOLUTION (2006)

Review Genetics & Heredity

On the origin and functions of RNA-mediated silencing: from protists to man

Heriberto Cerutti et al.

CURRENT GENETICS (2006)

Article Biochemical Research Methods

Hairpins in a Haystack: recognizing microRNA precursors in comparative genomics data

Jana Hertel et al.

BIOINFORMATICS (2006)

Article Biotechnology & Applied Microbiology

The expansion of the metazoan microRNA repertoire

J Hertel et al.

BMC GENOMICS (2006)

Article Biochemical Research Methods

Identification of plant microRNA homologs

T Dezulian et al.

BIOINFORMATICS (2006)

Article Biochemistry & Molecular Biology

miRBase: microRNA sequences, targets and gene nomenclature

Sam Griffiths-Jones et al.

NUCLEIC ACIDS RESEARCH (2006)

Article Biochemistry & Molecular Biology

Evidence that miRNAs are different from other RNAs

BH Zhang et al.

CELLULAR AND MOLECULAR LIFE SCIENCES (2006)

Article Biochemical Research Methods

Identification of clustered microRNAs using an ab initio prediction method -: art. no. 267

A Sewer et al.

BMC BIOINFORMATICS (2005)

Article Biochemical Research Methods

MicroRNA identification based on sequence and structure alignment

XW Wang et al.

BIOINFORMATICS (2005)

Article Biochemistry & Molecular Biology

Identification of new small non-coding RNAs from tobacco and Arabidopsis

B Billoud et al.

BIOCHIMIE (2005)

Article Biochemical Research Methods

Profile-based detection of microRNA precursors in animal genomes

M Legendre et al.

BIOINFORMATICS (2005)

Article Cell Biology

Repbase update, a database of eukaryotic repetitive elements

J Jurka et al.

CYTOGENETIC AND GENOME RESEARCH (2005)

Article Biochemistry & Molecular Biology

New human and mouse microRNA genes found by homology search

MJ Weber

FEBS JOURNAL (2005)

Article Biochemistry & Molecular Biology

The microRNA Registry

S Griffiths-Jones

NUCLEIC ACIDS RESEARCH (2004)

Review Biochemistry & Molecular Biology

The microRNA world: small is mighty

P Nelson et al.

TRENDS IN BIOCHEMICAL SCIENCES (2003)

Article Cell Biology

The microRNAs of Caenorhabditis elegans

LP Lim et al.

GENES & DEVELOPMENT (2003)

Article Multidisciplinary Sciences

Vertebrate MicroRNA genes

LP Lim et al.

SCIENCE (2003)

Article Biotechnology & Applied Microbiology

Computational identification of Drosophila microRNA genes

EC Lai et al.

GENOME BIOLOGY (2003)

Article Biochemical Research Methods

A greedy algorithm for aligning DNA sequences

Z Zhang et al.

JOURNAL OF COMPUTATIONAL BIOLOGY (2000)