4.7 Article Proceedings Paper

Open MS/MS spectral library search to identify unanticipated post-translational modifications and increase spectral identification rate

Related references

Note: Only part of the references are listed.
Article Biochemical Research Methods

Artificial Decoy Spectral Libraries for False Discovery Rate Estimation in Spectral Library Searching in Proteomics

Henry Lam et al.

JOURNAL OF PROTEOME RESEARCH (2010)

Article Biochemical Research Methods

A Simulated MS/MS Library for Spectrum-to-spectrum Searching in Large Scale Identification of Proteins

Chia-Yu Yen et al.

MOLECULAR & CELLULAR PROTEOMICS (2009)

Article Biochemistry & Molecular Biology

Targeted tandem affinity purification of PSD-95 recovers core postsynaptic complexes and schizophrenia susceptibility proteins

Esperanza Fernandez et al.

MOLECULAR SYSTEMS BIOLOGY (2009)

Article Biochemical Research Methods

A HUPO test sample study reveals common problems in mass spectrometry-based proteomics

Alexander W. Bell et al.

NATURE METHODS (2009)

Article Multidisciplinary Sciences

PTMap-A sequence alignment software for unrestricted, accurate, and full-spectrum identification of post-translational modification sites

Yue Chen et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2009)

Article Biochemical Research Methods

A simple workflow to increase MS2 identification rate by subsequent spectral library search

Erik Ahrne et al.

PROTEOMICS (2009)

Article Biochemical Research Methods

A Spectral Clustering Approach to MS/MS Identification of Post-Translational Modifications

Jayson A. Falkner et al.

JOURNAL OF PROTEOME RESEARCH (2008)

Article Biochemical Research Methods

Building consensus spectral libraries for peptide identification in proteomics

Henry Lam et al.

NATURE METHODS (2008)

Article Multidisciplinary Sciences

Precision proteomics: The case for high resolution and high mass accuracy

Matthias Mann et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2008)

Article Biochemical Research Methods

HMMatch: Peptide identification by spectral matching of tandem mass spectra using hidden Markov models

Xue Wu et al.

JOURNAL OF COMPUTATIONAL BIOLOGY (2007)

Article Biochemical Research Methods

ProMEX: a mass spectral reference database for proteins and protein phosphorylation sites

Jan Hummel et al.

BMC BIOINFORMATICS (2007)

Article Multidisciplinary Sciences

Protein identification by spectral networks analysis

Nuno Bandeira et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2007)

Article Biochemical Research Methods

Methods for peptide identification by spectral comparison

Jian Liu et al.

PROTEOME SCIENCE (2007)

Article Biochemical Research Methods

PFind 2.0: a software package for peptide and protein identification via tandem mass spectrometry

Le-heng Wang et al.

RAPID COMMUNICATIONS IN MASS SPECTROMETRY (2007)

Article Chemistry, Analytical

Analysis of peptide MS/MS spectra from large-scale proteomics experiments using spectrum libraries

Barbara E. Frewen et al.

ANALYTICAL CHEMISTRY (2006)

Article Biochemical Research Methods

Using annotated peptide mass spectrum libraries for protein identification

R. Craig et al.

JOURNAL OF PROTEOME RESEARCH (2006)

Article Biochemical Research Methods

Optimization and use of peptide mass measurement accuracy in shotgun proteomics

Wilhelm Haas et al.

MOLECULAR & CELLULAR PROTEOMICS (2006)

Article Biotechnology & Applied Microbiology

Identification of post-translational modifications by blind search of mass spectra

D Tsur et al.

NATURE BIOTECHNOLOGY (2005)