Journal
BIOINFORMATICS
Volume 25, Issue 7, Pages 971-973Publisher
OXFORD UNIV PRESS
DOI: 10.1093/bioinformatics/btp079
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Funding
- NSF [DMS-07-02277, DEB-04-47224]
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STEM is a software package written in the C language to obtain maximum likelihood (ML) estimates for phylogenetic species trees given a sample of gene trees under the coalescent model. It includes options to compute the ML species tree, search the space of all species trees for the k trees of highest likelihood and compute ML branch lengths for a user-input species tree.
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