Journal
BIOINFORMATICS
Volume 25, Issue 12, Pages 1554-1555Publisher
OXFORD UNIV PRESS
DOI: 10.1093/bioinformatics/btp255
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Funding
- National Basic Research Program of China [2007CB815701]
- National Natural Science Foundation of China [30730008, 30800060, 30600064, 40876075]
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We introduce a new visual analytics tool named MapView to facilitate the representation of large-scale short reads alignment data and genetic variation analysis. MapView can handle hundreds of millions of short reads on a desktop computer with limited memory. It supports a compact alignment view for both single-end and paired end short reads, multiple navigation and zoom modes and multi-thread processing. Moreover, MapView offers automated genetic variation detection. MapView has been used in our lab and by over 10 research labs worldwide.
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