Related references
Note: Only part of the references are listed.Analysis of homeodomain specificities allows the family-wide prediction of preferred recognition sites
Marcus B. Noyes et al.
CELL (2008)
Extracting sequence features to predict proteinDNA interactions: a comparative study
Qing Zhou et al.
NUCLEIC ACIDS RESEARCH (2008)
A systematic characterization of factors that regulate Drosophila segmentation via a bacterial one-hybrid system
Marcus B. Noyes et al.
NUCLEIC ACIDS RESEARCH (2008)
Analysis of the mouse embryonic stem cell regulatory networks obtained by ChIP-chip and ChIP-PET
Divya Mathur et al.
GENOME BIOLOGY (2008)
JASPAR, the open access database of transcription factor-binding profiles: new content and tools in the 2008 update
Jan Christian Bryne et al.
NUCLEIC ACIDS RESEARCH (2008)
A rationale for the enhanceosome and other evolutionarily constrained enhancers
Dmitri Papatsenko et al.
CURRENT BIOLOGY (2007)
Discovery of Fur binding site clusters in Escherichia coli by information theory models
Zehua Chen et al.
NUCLEIC ACIDS RESEARCH (2007)
Exact p-value calculation for heterotypic clusters of regulatory motifs and its application in computational annotation of cis-regulatory modules
Valentina Boeva et al.
ALGORITHMS FOR MOLECULAR BIOLOGY (2007)
Genome-wide profiles of STAT1 DNA association using chromatin immunoprecipitation and massively parallel sequencing
Gordon Robertson et al.
NATURE METHODS (2007)
Footprinting: A method for determining the sequence selectivity, affinity and kinetics of DNA-binding ligands
Andrew J. Hampshire et al.
METHODS (2007)
Mapping of transcription factor binding regions in mammalian cells by ChIP: Comparison of array- and sequencing-based technologies
Ghia M. Euskirchen et al.
GENOME RESEARCH (2007)
A survey of DNA motif finding algorithms
Modan K. Das et al.
BMC BIOINFORMATICS (2007)
Large-scale discovery of promoter motifs in Drosophila melanogaster
Thomas A. Down et al.
PLOS COMPUTATIONAL BIOLOGY (2007)
Detecting the limits of regulatory element conservation and divergence estimation using pairwise and multiple alignments
Daniel A. Pollard et al.
BMC BIOINFORMATICS (2006)
Short fuzzy tandem repeats in genomic sequences, identification, and possible role in regulation of gene expression
V Boeva et al.
BIOINFORMATICS (2006)
TRANSFAC (R) and its module TRANSCompel (R): transcriptional gene regulation in eukaryotes
V. Matys et al.
NUCLEIC ACIDS RESEARCH (2006)
Matlnspector and beyond: promoter analysis based on transcription factor binding sites
K Cartharius et al.
BIOINFORMATICS (2005)
A Gibbs sampler for identification of symmetrically structured, spaced DNA motifs with improved estimation of the signal length
AV Favorov et al.
BIOINFORMATICS (2005)
Drosophila DNase I footprint database:: a systematic genome annotation of transcription factor binding sites in the fruitfly, Drosophila melanogaster
CM Bergman et al.
BIOINFORMATICS (2005)
Evolution of transcription factor DNA binding sites
EA Kotelnikova et al.
GENE (2005)
WebLogo: A sequence logo generator
GE Crooks et al.
GENOME RESEARCH (2004)
Homotypic regulatory clusters in Drosophila
AP Lifanov et al.
GENOME RESEARCH (2003)
Phylogenetic shadowing of primate sequences to find functional regions of the human genome
D Boffelli et al.
SCIENCE (2003)
High-throughput SELEX-SAGE method for quantitative modeling of transcription-factor binding sites
E Roulet et al.
NATURE BIOTECHNOLOGY (2002)
Extraction of functional binding sites from unique regulatory regions: The Drosophila early developmental enhancers
DA Papatsenko et al.
GENOME RESEARCH (2002)
Algorithms for phylogenetic footprinting
M Blanchette et al.
JOURNAL OF COMPUTATIONAL BIOLOGY (2002)
Share Paper
