Related references
Note: Only part of the references are listed.Natural similarity measures between position frequency matrices with an application to clustering
Utz J. Pape et al.
BIOINFORMATICS (2008)
RSAT:: regulatory sequence analysis tools
Morgane Thomas-Chollier et al.
NUCLEIC ACIDS RESEARCH (2008)
TFBS identification based on genetic algorithm with combined representations and adaptive post-processing
Tak-Ming Chan et al.
BIOINFORMATICS (2008)
RegulonDB (version 6.0): gene regulation model of Escherichia coli K-12 beyond transcription, active (experimental) annotated promoters and Textpresso navigation
Socorro Gama-Castro et al.
NUCLEIC ACIDS RESEARCH (2008)
GibbsST: a Gibbs sampling method for motif discovery with enhanced resistance to local optima
Kazuhito Shida
BMC BIOINFORMATICS (2006)
GAME:: detecting cis-regulatory elements using a genetic algorithm
Zhi Wei et al.
BIOINFORMATICS (2006)
Assessing computational tools for the discovery of transcription factor binding sites
M Tompa et al.
NATURE BIOTECHNOLOGY (2005)
Computational discovery of gene regulatory binding motifs: A Bayesian perspective
ST Jensen et al.
STATISTICAL SCIENCE (2004)
Transcriptional regulatory code of a eukaryotic genome
CT Harbison et al.
NATURE (2004)
BioOptimizer: a Bayesian scoring function approach to motif discovery
ST Jensen et al.
BIOINFORMATICS (2004)
WebLogo: A sequence logo generator
GE Crooks et al.
GENOME RESEARCH (2004)
Regulatory Sequence Analysis Tools
J van Helden
NUCLEIC ACIDS RESEARCH (2003)
YMF: a program for discovery of novel transcription factor binding sites by statistical overrepresentation
S Sinha et al.
NUCLEIC ACIDS RESEARCH (2003)
Discovery of novel transcription factor binding sites by statistical overrepresentation
S Sinha et al.
NUCLEIC ACIDS RESEARCH (2002)
A Gibbs sampling method to detect overrepresented motifs in the upstream regions of coexpressed genes
G Thijs et al.
JOURNAL OF COMPUTATIONAL BIOLOGY (2002)
A higher-order background model improves the detection of promoter regulatory elements by Gibbs sampling
G Thijs et al.
BIOINFORMATICS (2001)
Discovering regulatory elements in non-coding sequences by analysis of spaced dyads
Jacques van Heiden et al.
NUCLEIC ACIDS RESEARCH (2000)
Computational identification of cis-regulatory elements associated with groups of functionally related genes in Saccharomyces cerevisiae
JD Hughes et al.
JOURNAL OF MOLECULAR BIOLOGY (2000)
Share Paper
