Journal
BIOINFORMATICS
Volume 25, Issue 24, Pages 3289-3295Publisher
OXFORD UNIV PRESS
DOI: 10.1093/bioinformatics/btp581
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Funding
- National Institutes of Health [R01-GM07898901]
- Technology Centers for Networks and Pathways [U54RR022232]
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Motivation: Models of regulatory networks become more difficult to construct and understand as they grow in size and complexity. Modelers naturally build large models from smaller components that each represent subsets of reactions within the larger network. To assist modelers in this process, we present model aggregation, which defines models in terms of components that are designed for the purpose of being combined. Results: We have implemented a model editor that incorporates model aggregation, and we suggest supporting extensions to the Systems Biology Markup Language (SBML) Level 3. We illustrate aggregation with a model of the eukaryotic cell cycle 'engine' created from smaller pieces.
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