Journal
BIOINFORMATICS
Volume 24, Issue 10, Pages 1321-1322Publisher
OXFORD UNIV PRESS
DOI: 10.1093/bioinformatics/btn122
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Funding
- NHGRI NIH HHS [2 U01 HG02712-04] Funding Source: Medline
- NIGMS NIH HHS [1R01GM080646-01] Funding Source: Medline
- PHS HHS [1R01HGO2273-01] Funding Source: Medline
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Programmatic access to the UniProt Knowledgebase (UniProtKB) is essential for many bioinformatics applications dealing with protein data. We have created a Java library named UniProtJAPI, which facilitates the integration of UniProt data into Java-based software applications. The library supports queries and similarity searches that return UniProtKB entries in the form of Java objects. These objects contain functional annotations or sequence information associated with a UniProt entry. Here, we briefly describe the UniProtJAPI and demonstrate its usage.
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