4.7 Article

Integrating and annotating the interactome using the MiMI plugin for cytoscape

Journal

BIOINFORMATICS
Volume 25, Issue 1, Pages 137-138

Publisher

OXFORD UNIV PRESS
DOI: 10.1093/bioinformatics/btn501

Keywords

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Funding

  1. National Institutes of Health [R01 LM008106, P41 RR018627, U54 DA021519]
  2. NATIONAL CENTER FOR RESEARCH RESOURCES [P41RR018627] Funding Source: NIH RePORTER
  3. NATIONAL INSTITUTE ON DRUG ABUSE [U54DA021519] Funding Source: NIH RePORTER
  4. NATIONAL LIBRARY OF MEDICINE [R01LM008106] Funding Source: NIH RePORTER

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The MiMI molecular interaction repository integrates data from multiple sources, resolves interactions to standard gene names and symbols, links to annotation data from GO, MeSH and PubMed and normalizes the descriptions of interaction type. Here, we describe a Cytoscape plugin that retrieves interaction and annotation data from MiMI and links out to multiple data sources and tools. Community annotation of the interactome is supported.

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