Journal
BIOINFORMATICS
Volume 24, Issue 13, Pages 1540-1541Publisher
OXFORD UNIV PRESS
DOI: 10.1093/bioinformatics/btn230
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DupTree is a new software program for inferring rooted species trees from collections of gene trees using the gene tree parsimony approach. The program implements a novel algorithm that significantly improves upon the run time of standard search heuristics for gene tree parsimony, and enables the first truly genome-scale phylogenetic analyses. In addition, DupTree allows users to examine alternate rootings and to weight the reconciliation costs for gene trees. DupTree is an open source project written in C.
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