Journal
BIOINFORMATICS
Volume 24, Issue 10, Pages 1307-1309Publisher
OXFORD UNIV PRESS
DOI: 10.1093/bioinformatics/btn105
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CompariMotif is a novel tool for making motifmotif comparisons, identifying and describing similarities between regular expression motifs. CompariMotif can identify a number of different relationships between motifs, including exact matches, variants of degenerate motifs and complex overlapping motifs. Motif relationships are scored using shared information content, allowing the best matches to be easily identified in large comparisons. Many input and search options are available, enabling a list of motifs to be compared to itself (to identify recurring motifs) or to datasets of known motifs.
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