Related references
Note: Only part of the references are listed.Data growth and its impact on the SCOP database: new developments
Antonina Andreeva et al.
NUCLEIC ACIDS RESEARCH (2008)
Database resources of the National Center for Biotechnology Information
David L. Wheeler et al.
NUCLEIC ACIDS RESEARCH (2007)
The SUPERFAMILY database in 2007: families and functions
Derek Wilson et al.
NUCLEIC ACIDS RESEARCH (2007)
Retrieval accuracy, statistical significance and compositional similarity in protein sequence database searches
Yi-Kuo Yu et al.
NUCLEIC ACIDS RESEARCH (2006)
SSALN: An alignment algorithm using structure-dependent substitution matrices and gap penalties learned from structurally aligned protein pairs
J Qiu et al.
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2006)
Pfam: clans, web tools and services
Robert D. Finn et al.
NUCLEIC ACIDS RESEARCH (2006)
Calibrating E-values for hidden Markov models using reverse-sequence null models
K Karplus et al.
BIOINFORMATICS (2005)
Statistical evaluation of pairwise protein sequence comparison with the Bayesian bootstrap
GA Price et al.
BIOINFORMATICS (2005)
Improved profile HMM performance by assessment of critical algorithmic features in SAM and HMMER
M Wistrand et al.
BMC BIOINFORMATICS (2005)
Comparative evaluation of word composition distances for the recognition of SCOP relationships
S Vinga et al.
BIOINFORMATICS (2004)
Empirical analysis of protein insertions and deletions determining parameters for the correct placement of gaps in protein sequence alignments
MSS Chang et al.
JOURNAL OF MOLECULAR BIOLOGY (2004)
The ASTRAL Compendium in 2004
JM Chandonia et al.
NUCLEIC ACIDS RESEARCH (2004)
The compositional adjustment of amino acid substitution matrices
YK Yu et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2003)
Bootstrapping and normalization for enhanced evaluations of pairwise sequence comparison
RE Green et al.
PROCEEDINGS OF THE IEEE (2002)
Empirical determination of effective gap penalties for sequence comparison
JT Reese et al.
BIOINFORMATICS (2002)
Comparison of three methods for estimating the standard error of the area under the curve in ROC analysis of quantitative data
KO Hajian-Tilaki et al.
ACADEMIC RADIOLOGY (2002)
A comparison of profile hidden Markov model procedures for remote homology detection
M Madera et al.
NUCLEIC ACIDS RESEARCH (2002)
Hybrid alignment: high-performance with universal statistics
YK Yu et al.
BIOINFORMATICS (2002)
Assignment of homology to genome sequences using a library of hidden Markov models that represent all proteins of known structure
J Gough et al.
JOURNAL OF MOLECULAR BIOLOGY (2001)
Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements
AA Schäffer et al.
NUCLEIC ACIDS RESEARCH (2001)
Statistical significance of probabilistic sequence alignment and related local hidden Markov models
YK Yu et al.
JOURNAL OF COMPUTATIONAL BIOLOGY (2001)
Share Paper
