Related references
Note: Only part of the references are listed.Determining the evolutionary history of gene families
Ryan M. Ames et al.
BIOINFORMATICS (2012)
Origin and evolution of spliceosomal introns
Igor B. Rogozin et al.
BIOLOGY DIRECT (2012)
Updated clusters of orthologous genes for Archaea: a complex ancestor of the Archaea and the byways of horizontal gene transfer
Yuri I. Wolf et al.
BIOLOGY DIRECT (2012)
Independent Genome Reduction and Phylogenetic Reclassification of the Oceanic SAR11 Clade
Johan Viklund et al.
MOLECULAR BIOLOGY AND EVOLUTION (2012)
The Black Queen Hypothesis: Evolution of Dependencies through Adaptive Gene Loss
J. Jeffrey Morris et al.
MBIO (2012)
The Origins of Cooperative Bacterial Communities
J. L. Sachs et al.
MBIO (2012)
Rhizome of life, catastrophes, sequence exchanges, gene creations, and giant viruses: how microbial genomics challenges Darwin
Vicky Merhej et al.
FRONTIERS IN CELLULAR AND INFECTION MICROBIOLOGY (2012)
Rickettsial evolution in the light of comparative genomics
Vicky Merhej et al.
BIOLOGICAL REVIEWS (2011)
Energetics and genetics across the prokaryote-eukaryote divide
Nick Lane
BIOLOGY DIRECT (2011)
Genome fluctuations in cyanobacteria reflect evolutionary, developmental and adaptive traits
John Larsson et al.
BMC EVOLUTIONARY BIOLOGY (2011)
Differences in lateral gene transfer in hypersaline versus thermal environments
Matthew E. Rhodes et al.
BMC EVOLUTIONARY BIOLOGY (2011)
The intriguing nature of microsporidian genomes
Nicolas Corradi et al.
BRIEFINGS IN FUNCTIONAL GENOMICS (2011)
Inference of Gain and Loss Events from Phyletic Patterns Using Stochastic Mapping and Maximum Parsimony-A Simulation Study
Ofir Cohen et al.
GENOME BIOLOGY AND EVOLUTION (2011)
Massive Genomic Decay in Serratia symbiotica, a Recently Evolved Symbiont of Aphids
Gaelen R. Burke et al.
GENOME BIOLOGY AND EVOLUTION (2011)
Metabolic modeling of endosymbiont genome reduction on a temporal scale
Keren Yizhak et al.
MOLECULAR SYSTEMS BIOLOGY (2011)
Bacterial symbionts in insects or the story of communities affecting communities
Julia Ferrari et al.
PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2011)
A Detailed History of Intron-rich Eukaryotic Ancestors Inferred from a Global Survey of 100 Complete Genomes
Miklos Csuros et al.
PLOS COMPUTATIONAL BIOLOGY (2011)
Sequence Conservation and Functional Constraint on Intergenic Spacers in Reduced Genomes of the Obligate Symbiont Buchnera
Patrick H. Degnan et al.
PLOS GENETICS (2011)
Strong functional patterns in the evolution of eukaryotic genomes revealed by the reconstruction of ancestral protein domain repertoires
Christian M. Zmasek et al.
GENOME BIOLOGY (2011)
Prochlorococcus: Advantages and Limits of Minimalism
Frederic Partensky et al.
ANNUAL REVIEW OF MARINE SCIENCE (2010)
Count: evolutionary analysis of phylogenetic profiles with parsimony and likelihood
Miklos Csuroes
BIOINFORMATICS (2010)
The Incredible Expanding Ancestor of Eukaryotes
Eugene V. Koonin
CELL (2010)
The Genome of Naegleria gruberi Illuminates Early Eukaryotic Versatility
Lillian K. Fritz-Laylin et al.
CELL (2010)
The energetics of genome complexity
Nick Lane et al.
NATURE (2010)
Evolution of diverse cell division and vesicle formation systems in Archaea
Kira S. Makarova et al.
NATURE REVIEWS MICROBIOLOGY (2010)
Diversity and reductive evolution of mitochondria among microbial eukaryotes
Karin Hjort et al.
PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2010)
Functional diversity of ankyrin repeats in microbial proteins
Souhaila Al-Khodor et al.
TRENDS IN MICROBIOLOGY (2010)
The origin and early evolution of eukaryotes in the light of phylogenomics
Eugene V. Koonin
GENOME BIOLOGY (2010)
Nucleomorph Genomes
Christa E. Moore et al.
ANNUAL REVIEW OF GENETICS (2009)
Deletional Bias across the Three Domains of Life
Chih-Horng Kuo et al.
GENOME BIOLOGY AND EVOLUTION (2009)
Evolution of genome architecture
Eugene V. Koonin
INTERNATIONAL JOURNAL OF BIOCHEMISTRY & CELL BIOLOGY (2009)
Trends in Prokaryotic Evolution Revealed by Comparison of Closely Related Bacterial and Archaeal Genomes
Pavel S. Novichkov et al.
JOURNAL OF BACTERIOLOGY (2009)
Streamlining and Large Ancestral Genomes in Archaea Inferred with a Phylogenetic Birth-and-Death Model
Miklos Csuros et al.
MOLECULAR BIOLOGY AND EVOLUTION (2009)
Genomics and Evolution of Heritable Bacterial Symbionts
Nancy A. Moran et al.
ANNUAL REVIEW OF GENETICS (2008)
Host-bacterial coevolution and the search for new drug targets
Jesse Zaneveld et al.
CURRENT OPINION IN CHEMICAL BIOLOGY (2008)
Population structure, levels of selection, and the evolution of intracellular symbionts
Brendan O'Fallon
EVOLUTION (2008)
Extremely intron-rich genes in the alveolate ancestors inferred with a flexible maximum-likelihood approach
Miklos Csuros et al.
MOLECULAR BIOLOGY AND EVOLUTION (2008)
A likelihood framework to analyse phyletic patterns
Ofir Cohen et al.
PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2008)
Encapsulated in silica: genome, proteome and physiology of the thermophilic bacterium Anoxybacillus flavithermus WK1
Jimmy H. Saw et al.
GENOME BIOLOGY (2008)
From endosymbiont to host-controlled organelle:: The hijacking of mitochondrial protein synthesis and metabolism
Toni Gabaldon et al.
PLOS COMPUTATIONAL BIOLOGY (2007)
Patterns of intron gain and conservation in eukaryotic genes
Liran Carmel et al.
BMC EVOLUTIONARY BIOLOGY (2007)
Three distinct modes of intron dynamics in the evolution of eukaryotes
Liran Carmel et al.
GENOME RESEARCH (2007)
Why weight?
Karl M. Kjer et al.
MOLECULAR PHYLOGENETICS AND EVOLUTION (2007)
The frailty of adaptive hypotheses for the origins of organismal complexity
Michael Lynch
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2007)
Purifying selection in mitochondria, free-living and obligate intracellular proteobacteria
Leila Mamirova et al.
BMC EVOLUTIONARY BIOLOGY (2007)
Evolutionary genomics of lactic acid bacteria
Kira S. Makarova et al.
JOURNAL OF BACTERIOLOGY (2007)
Reductive genome evolution from the mother of Rickettsia
Guillaume Blanc et al.
PLOS GENETICS (2007)
Bushes in the tree of life
Antonis Rokas et al.
PLOS BIOLOGY (2006)
Comparative genomics of the lactic acid bacteria
K. Makarova et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2006)
Eukaryotic evolution, changes and challenges
TM Embley et al.
NATURE (2006)
Introns and the origin of nucleus-cytosol compartmentalization
W Martin et al.
NATURE (2006)
SIMMAP: Stochastic character mapping of discrete traits on phylogenies
JP Bollback
BMC BIOINFORMATICS (2006)
The domino theory' of gene death: Gradual and mass gene extinction events in three lineages of obligate symbiotic bacterial pathogens
T Dagan et al.
MOLECULAR BIOLOGY AND EVOLUTION (2006)
Animal evolution and the molecular signature of radiations compressed in time
A Rokas et al.
SCIENCE (2005)
For better or worse: genomic consequences of intracellular mutualism and parasitism
JJ Wernegreen
CURRENT OPINION IN GENETICS & DEVELOPMENT (2005)
Ancestral state reconstructions for genomes
CA Ouzounis
CURRENT OPINION IN GENETICS & DEVELOPMENT (2005)
Lineage-specific gene loss following mitochondrial endosymbiosis and its potential for function prediction in eukaryotes
T Gabaldón et al.
BIOINFORMATICS (2005)
Genome streamlining in a cosmopolitan oceanic bacterium
SJ Giovannoni et al.
SCIENCE (2005)
Accelerated evolution associated with genome reduction in a free-living prokaryote
A Dufresne et al.
GENOME BIOLOGY (2005)
Ancestral paralogs and pseudoparalogs and their role in the emergence of the eukaryotic cell
KS Makarova et al.
NUCLEIC ACIDS RESEARCH (2005)
Endosymbiotic gene transfer: Organelle genomes forge eukaryotic chromosomes
JN Timmis et al.
NATURE REVIEWS GENETICS (2004)
Insertion-deletion biases and the evolution of genome size
TR Gregory
GENE (2004)
Genome-wide molecular clock and horizontal gene transfer in bacterial evolution
PS Novichkov et al.
JOURNAL OF BACTERIOLOGY (2004)
A comprehensive evolutionary classification of proteins encoded in complete eukaryotic genomes
EV Koonin et al.
GENOME BIOLOGY (2004)
Algorithms for computing parsimonious evolutionary scenarios for genome evolution, the last universal common ancestor and dominance of horizontal gene transfer in the evolution of prokaryotes
BG Mirkin et al.
BMC EVOLUTIONARY BIOLOGY (2003)
DNA loss and evolution of genome size in Drosophila
DA Petrov
GENETICA (2002)
Microbial minimalism: Genome reduction in bacterial pathogens
NA Moran
CELL (2002)
Genomes in flux: The evolution of archaeal and proteobacterial gene content
B Snel et al.
GENOME RESEARCH (2002)
Functional complexity in organisms: Parts as proxies
DW McShea
BIOLOGY & PHILOSOPHY (2000)
Share Paper
