4.4 Article

Newly evolved genes: Moving from comparative genomics to functional studies in model systems

Related references

Note: Only part of the references are listed.
Article Biochemistry & Molecular Biology

Chimeric Genes as a Source of Rapid Evolution in Drosophila melanogaster

Rebekah L. Rogers et al.

MOLECULAR BIOLOGY AND EVOLUTION (2012)

Article Biochemistry & Molecular Biology

PLEXdb: gene expression resources for plants and plant pathogens

Sudhansu Dash et al.

NUCLEIC ACIDS RESEARCH (2012)

Article Genetics & Heredity

A Recurrent Deletion of DPY19L2 Causes Infertility in Man by Blocking Sperm Head Elongation and Acrosome Formation

Radu Harbuz et al.

AMERICAN JOURNAL OF HUMAN GENETICS (2011)

Article Biochemistry & Molecular Biology

De novo origin of new genes with introns in Plasmodium vivax

Zefeng Yang et al.

FEBS LETTERS (2011)

Review Genetics & Heredity

The evolutionary origin of orphan genes

Diethard Tautz et al.

NATURE REVIEWS GENETICS (2011)

Article Biochemistry & Molecular Biology

The mouse Gene Expression Database (GXD): 2011 update

Jacqueline H. Finger et al.

NUCLEIC ACIDS RESEARCH (2011)

Article Biochemistry & Molecular Biology

ArrayExpress update-an archive of microarray and high-throughput sequencing-based functional genomics experiments

Helen Parkinson et al.

NUCLEIC ACIDS RESEARCH (2011)

Article Biochemistry & Molecular Biology

NCBI GEO: archive for functional genomics data sets-10 years on

Tanya Barrett et al.

NUCLEIC ACIDS RESEARCH (2011)

Article Biochemistry & Molecular Biology

Accelerated Recruitment of New Brain Development Genes into the Human Genome

Yong E. Zhang et al.

PLOS BIOLOGY (2011)

Article Biochemistry & Molecular Biology

The Reality of Pervasive Transcription

Michael B. Clark et al.

PLOS BIOLOGY (2011)

Article Genetics & Heredity

De Novo Origin of Human Protein-Coding Genes

Dong-Dong Wu et al.

PLOS GENETICS (2011)

Article Genetics & Heredity

Warsaw Breakage Syndrome, a Cohesinopathy Associated with Mutations in the XPD Helicase Family Member DDX11/ChIR1

Petra van der Lelij et al.

AMERICAN JOURNAL OF HUMAN GENETICS (2010)

Article Biotechnology & Applied Microbiology

The rapid generation of chimerical genes expanding protein diversity in zebrafish

Beide Fu et al.

BMC GENOMICS (2010)

Review Biochemistry & Molecular Biology

Origins, evolution, and phenotypic impact of new genes

Henrik Kaessmann

GENOME RESEARCH (2010)

Article Biochemistry & Molecular Biology

The Mouse Genome Database: enhancements and updates

Carol J. Bult et al.

NUCLEIC ACIDS RESEARCH (2010)

Article Multidisciplinary Sciences

Adaptive landscapes and protein evolution

Mauricio Carneiro et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2010)

Article Multidisciplinary Sciences

Adaptive impact of the chimeric gene Quetzalcoatl in Drosophila melanogaster

Rebekah L. Rogers et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2010)

Review Biology

Gene copy-number polymorphism in nature

Daniel R. Schrider et al.

PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2010)

Article Multidisciplinary Sciences

Rapid Diversification of Cell Signaling Phenotypes by Modular Domain Recombination

Sergio G. Peisajovich et al.

SCIENCE (2010)

Article Multidisciplinary Sciences

New Genes in Drosophila Quickly Become Essential

Sidi Chen et al.

SCIENCE (2010)

Article Biochemistry & Molecular Biology

Most Dark Matter'' Transcripts Are Associated With Known Genes

Harm van Bakel et al.

PLOS BIOLOGY (2010)

Article Biochemical Research Methods

A Human-Specific De Novo Protein-Coding Gene Associated with Human Brain Functions

Chuan-Yun Li et al.

PLOS COMPUTATIONAL BIOLOGY (2010)

Article Biochemistry & Molecular Biology

Emergence of a New Gene from an Intergenic Region

Tobias J. A. J. Heinen et al.

CURRENT BIOLOGY (2009)

Article Genetics & Heredity

Formation and Longevity of Chimeric and Duplicate Genes in Drosophila melanogaster

Rebekah L. Rogers et al.

GENETICS (2009)

Article Biochemistry & Molecular Biology

Recent de novo origin of human protein-coding genes

David G. Knowles et al.

GENOME RESEARCH (2009)

Review Evolutionary Biology

Distinguishing Among Evolutionary Models for the Maintenance of Gene Duplicates

Matthew W. Hahn

JOURNAL OF HEREDITY (2009)

Article Biochemistry & Molecular Biology

Origin of Primate Orphan Genes: A Comparative Genomics Approach

Macarena Toll-Riera et al.

MOLECULAR BIOLOGY AND EVOLUTION (2009)

Article Biochemistry & Molecular Biology

Comparative Analysis of Structural Diversity and Sequence Evolution in Plant Mitochondrial Genes Transferred to the Nucleus

Shao-Lun Liu et al.

MOLECULAR BIOLOGY AND EVOLUTION (2009)

Article Multidisciplinary Sciences

Transcriptome sequencing to detect gene fusions in cancer

Christopher A. Maher et al.

NATURE (2009)

Review Neurosciences

Evolution of the neocortex: a perspective from developmental biology

Pasko Rakic

NATURE REVIEWS NEUROSCIENCE (2009)

Article Multidisciplinary Sciences

A Rice Gene of De Novo Origin Negatively Regulates Pathogen-Induced Defense Response

Wenfei Xiao et al.

PLOS ONE (2009)

Article Biochemical Research Methods

A guide to the Proteomics Identifications Database proteomics data repository

Juan Antonio Vizcaino et al.

PROTEOMICS (2009)

Review Genetics & Heredity

The origins and impact of primate segmental duplications

Tomas Marques-Bonet et al.

TRENDS IN GENETICS (2009)

Article Biotechnology & Applied Microbiology

Evolutionary origin of regulatory regions of retrogenes in Drosophila

Yongsheng Bai et al.

BMC GENOMICS (2008)

Review Biochemistry & Molecular Biology

PeptideAtlas: a resource for target selection for emerging targeted proteomics workflows

Eric W. Deutsch et al.

EMBO REPORTS (2008)

Article Biochemistry & Molecular Biology

On the origin of new genes in Drosophila

Qi Zhou et al.

GENOME RESEARCH (2008)

Article Multidisciplinary Sciences

The evolution of courtship behaviors through the origination of a new gene in Drosophila

Hongzheng Dai et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2008)

Article Multidisciplinary Sciences

TRIMCyp expression in old world primates Macaca nemestrina and Macaca fascicularis

Greg Brennan et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2008)

Article Genetics & Heredity

Gene family evolution across 12 Drosophila genomes

Matthew W. Hahn et al.

PLOS GENETICS (2007)

Article Genetics & Heredity

Using FlyAtlas to identify better Drosophila melanogaster models of human disease

Venkateswara R. Chintapalli et al.

NATURE GENETICS (2007)

Review Oncology

The impact of translocations and gene fusions on cancer causation

Felix Mitelman et al.

NATURE REVIEWS CANCER (2007)

Article Multidisciplinary Sciences

The Evolution of Mammalian Gene Families

Jeffery P. Demuth et al.

PLOS ONE (2006)

Article Multidisciplinary Sciences

The 160-kilobase genome of the bacterial endosymbiont Carsonella

Atsushi Nakabachi et al.

SCIENCE (2006)

Article Biochemistry & Molecular Biology

High rate of chimeric gene origination by retroposition in plant genomes

Wen Wang et al.

PLANT CELL (2006)

Article Genetics & Heredity

Parallel adaptive origins of digestive RNases in Asian and African leaf monkeys

Jianzhi Zhang

NATURE GENETICS (2006)

Article Multidisciplinary Sciences

Novel genes derived from noncoding DNA in Drosophila melanogaster are frequently X-linked and exhibit testis-biased expression

Mia T. Levine et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2006)

Article Biochemistry & Molecular Biology

On the formation of novel genes by duplication in the caenorhabditis elegans genome

V Katju et al.

MOLECULAR BIOLOGY AND EVOLUTION (2006)

Article Multidisciplinary Sciences

Placing confidence limits on the molecular age of the human-chimpanzee divergence

S Kumar et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2005)

Article Multidisciplinary Sciences

Parallel evolution of chimeric fusion genes

CD Jones et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2005)

Article Biochemistry & Molecular Biology

Complex genomic rearrangements lead to novel primate gene function

FD Ciccarelli et al.

GENOME RESEARCH (2005)

Article Biochemistry & Molecular Biology

Origin and neofunctionalization of a Drosophila paternal effect gene essential for zygote viability

B Loppin et al.

CURRENT BIOLOGY (2005)

Article Biochemistry & Molecular Biology

Temporal patterns of fruit fly (Drosophila) evolution revealed by mutation clocks

K Tamura et al.

MOLECULAR BIOLOGY AND EVOLUTION (2004)

Article Multidisciplinary Sciences

Evolving protein functional diversity in new genes of Drosophila

JM Zhang et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2004)

Article Genetics & Heredity

Modular assembly of genes and the evolution of new functions

L Patthy

GENETICA (2003)

Article Biochemistry & Molecular Biology

Retroposed new genes out of the X in Drosophila

E Betrán et al.

GENOME RESEARCH (2002)

Article Multidisciplinary Sciences

A draft sequence of the rice genome (Oryza sativa L. ssp japonica)

SA Goff et al.

SCIENCE (2002)

Article Multidisciplinary Sciences

A draft sequence of the rice genome (Oryza sativa L. ssp indica)

J Yu et al.

SCIENCE (2002)

Article Multidisciplinary Sciences

Origin of sphinx, a young chimeric RNA gene in Drosophila melanogaster

W Wang et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2002)

Article Multidisciplinary Sciences

Recombinatoric exploration of novel folded structures: A heteropolymer-based model of protein evolutionary landscapes

Y Cui et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2002)

Article Multidisciplinary Sciences

Birth of two chimeric genes in the Hominidae lineage

A Courseaux et al.

SCIENCE (2001)