Journal
JOURNAL OF CHEMICAL INFORMATION AND COMPUTER SCIENCES
Volume 42, Issue 3, Pages 577-585Publisher
AMER CHEMICAL SOC
DOI: 10.1021/ci0100898
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The search spaces in combinatorial chemistry as well as the sequence spaces underlying (molecular) evolution are conventionally thought of as graphs. Recombination, however, implies a nongraphical structure of the combinatorial search spaces. These structures, and their implications for search process itself, are heretofore not well understood in general. In this contribution we review a very general formalism from point set topology and discuss its application to combinatorial search spaces. fitness landscapes. evolutionary trajectories, and artificial chemistries.
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